Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04098 ATGGCTACTATGTTTTCTGTAGGTTCAGGCTCTGCTTTTCTTTTTCATAGCACAGGCTTGTCCTTGGTAACCAAAGGACCACTCCTTCAGCTGAAGAGGCCTCTCTCTGCAAAGTCAGTTGCTTCTTTGGGAACAGAGACATCAGTGTCTCCAGCAGTTCAAACCTTCTGGAAGTGGATGCAGGAAGAAGGTGTTATCTCTTCCAAGACCCCAGTGAAGGCTGCTGTTGTTCCAGAAGGCCTGGGACTGATTGCCCTCAAAGACATTTCTAGGAATGAGGTTGTTTTGCAGGTACCCAAGAGGCTGTGGATCAACCCTGATGCAGTGGCAGCTTCAGAGATTGGGAATGTGTGTAGTGGTTTGAAACCATGGTTGGCTGTTGCCCTCTTTCTGATTAGAGAGAGGTCAAGGGATGATTCTCGTTGGAAGCACTACTTCAGTATTCTGCCACAGGAAACTGATTCCACTATATATTGGTCAGAGGAGGAGCTCTCAGAGCTTCAAGGTACTCAACTTCTGAAAACAACACTCTCTGTGAAAGAATATGTGAAGAATGAATTTCTGAGACTGGAAGAAGAGATCATTCTCCCTAATAAGAAGCTTTTCCCTTCTCCTATAACACTGGATGACTTCTTCTGGGCATTTGGAATCCTCAGATCAAGGGCATTTTCTCGCCTCCGCAATGAAAATCTAGTTGTGATTCCACTAGCAGACTTGGTAAGGTCATTTTCATTTTCTCTCTTTCTTGCCAGAGTAACTACAGAAGATCATGCTCAAGAAGTTAAAGGACCAGCAGGCCTTTTCTCTTGGGATTACCTATTTTCCCTAAGGAGCCCCCTTTCTCTCAAGGCTGGGGACCAGGTTTATATCCAGTATGATTTGAAAAAAAGCAATGCCGAGTTAGCTTTGGACTACGGTTTCATTGAACCAAATCCAGATCGGAATGCATATACCTTGACATTGGGGATATCTGAGTCAGACCCCTTTTTTGATGACAAACTAGACATTGCTGAGTCCAATGGTTTTGGTGAGACAGCATACTTTGACATATTCTACAACTGTCCACTTCCACCAGGGTTGCTTCCATATCTGAGACTGGTGGCATTAGGGGGTACTGATGCTTTCTTATTGGAATCACTATTCAGAAACTCCATATGGGGTCATCTTGAATTGTCTGTGAGTCGTGACAATGAGGAGCTAATATGCCGAGTGGTTCGAGAGGCTTGCAAATCTGCCCTTTCTGGTTATCCCACAACCATTGAAGAGGATCGCAAGTTGAAAGAAGCAAATCTAGATTCAAGACATGCAATGGCAGTTGGAATAAGAGAAGGAGAGAAGATGGTCTTGCAGCAAATCGATGAGACCTTTAAGAAGAAAGAACTGGAATTGGATCAGTTAGAATATTATCAAGAAAGGAGGCTCAAGGAACTTGGACTCTGCGGAGAAAATGGTGATATCCTTGGTGACCTTGGAAAATTCTTCTAA 1485 0.4384 MATMFSVGSGSAFLFHSTGLSLVTKGPLLQLKRPLSAKSVASLGTETSVSPAVQTFWKWMQEEGVISSKTPVKAAVVPEGLGLIALKDISRNEVVLQVPKRLWINPDAVAASEIGNVCSGLKPWLAVALFLIRERSRDDSRWKHYFSILPQETDSTIYWSEEELSELQGTQLLKTTLSVKEYVKNEFLRLEEEIILPNKKLFPSPITLDDFFWAFGILRSRAFSRLRNENLVVIPLADLVRSFSFSLFLARVTTEDHAQEVKGPAGLFSWDYLFSLRSPLSLKAGDQVYIQYDLKKSNAELALDYGFIEPNPDRNAYTLTLGISESDPFFDDKLDIAESNGFGETAYFDIFYNCPLPPGLLPYLRLVALGGTDAFLLESLFRNSIWGHLELSVSRDNEELICRVVREACKSALSGYPTTIEEDRKLKEANLDSRHAMAVGIREGEKMVLQQIDETFKKKELELDQLEYYQERRLKELGLCGENGDILGDLGKFF. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04098 494 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 50 440 - -
Seca12g04098 494 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 49 307 - -
Seca12g04098 494 Gene3D - 309 473 IPR036464 -
Seca12g04098 494 SUPERFAMILY SET domain 50 314 IPR046341 -
Seca12g04098 494 CDD SET_RBCMT 64 308 IPR044431 GO:0016279|GO:0018022
Seca12g04098 494 ProSiteProfiles SET domain profile. 63 293 IPR001214 GO:0005515
Seca12g04098 494 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 11 492 IPR011192 GO:0009507|GO:0030785
Seca12g04098 494 Gene3D set domain protein methyltransferase, domain 1 48 308 - -
Seca12g04098 494 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 309 473 - -
Seca12g04098 494 PIRSF RMT_SET 1 493 IPR011192 GO:0009507|GO:0030785
Seca12g04098 494 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 316 487 IPR036464 -
Seca12g04098 494 Pfam Rubisco LSMT substrate-binding 325 449 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04098 Seca-Chr12 110458843 110462182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04098 48 239 NAC Transcription Factor Family AT3G56570 28.713 1.93e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04098 K00592 - gmx:100818113 814.298