Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04091 ATGGGAAGGTCACCATGCTGTGAAAAGGTGGGGTTGAAGAAAGGGCCATGGACCCCGGAAGAAGACCAAAAGCTCATGGCTTACATTGAAGAATATGGCCATGGAAGCTGGCGTGCACTGCCTGCCAAAGCTGGCCTTCAAAGATGTGGAAAGAGCTGCAGACTGAGGTGGACTAACTACCTTCGACCTGATATAAAAAGAGGAAAGTTCAGCTTGCAAGAAGAGCAAACCATTATTCAACTCCATGCCCTTCTTGGAAACAGATGGTCAGCAATAGCAGCTCAACTGCCGAAGAGAACGGACAATGAGATAAAGAACTATTGGAACACACACCTCAAGAAAAGGCTAACCAGAATGGGCATAGACCCAACAACCCACAAGCCCAAAACCAATGCCCTTGGTGGTTCCAGTGGCTGCCACTCCAAAGACGCAGCCAACCTGAGCCACATGGCTCAGTGGGAGAATGCTCGTCTTGAAGCCGAAGCAAGACTTGTTAGAGAAGCCAAGTTGCAGTTACAGCTCCAAAACCAAAACAACCAACTCGGATCCTGCTCCTCCACACAGCCAGCTAGGCTCGTTCTCAACAAAATCACAAGGCAACATCCATCACTACCACCATGCCTTGATATCCTCAAGGCATGGCAAAGTTCATGGACATCCAAGCCACAACCAACTAATAAAGACACTAATAACAACAACAAGATGCATAGCATGTATGCCATGATGCTATCCACTGATGACACCCTTGAATCCCCAACCTCCACATTGAACTTCCCCGGAACCGTCCTTCCACTTCCTCTTCCTCTCCCTACCAACAACGTTGGACTAATCAATGAAAGTCCACTCCCACTCACCACAACTAATATTGTCACACCCATGGATCAGTTTAACAAAAGTTCTTCAGCTATTAGTGATCACAATAATGAGTCGTGGAAATATTTGTATTTAACAAAGGAGAACTTAGAAGGTGAAAGGAAGGTGGAGAACACGATGTTGAACTTGCAAGACGACGACGACATTATGGCGGCTGTGGAAGCATTTAGATCTGGTGGGTACGACAACAACAACAATATTATGAGTATGTCCACACTCTCAAGCAATAATATTAATGTCCTCGAAGCACTCAACAATGATGATGCGGTGGTTTATGATCCCTCCTTAGCGGATGAAGAGAAGTTGGCAATGGTTAATGGGGATGGAGGATCCAGCATGTGCAACGTGAACATGGAGGAGAATAAGCATTACTGGACCAGTATACTTAATAACTTGGTGAATGACTCGCTGTCTGGTTCGTCAGTGTTCTGA 1305 0.4598 MGRSPCCEKVGLKKGPWTPEEDQKLMAYIEEYGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTNALGGSSGCHSKDAANLSHMAQWENARLEAEARLVREAKLQLQLQNQNNQLGSCSSTQPARLVLNKITRQHPSLPPCLDILKAWQSSWTSKPQPTNKDTNNNNKMHSMYAMMLSTDDTLESPTSTLNFPGTVLPLPLPLPTNNVGLINESPLPLTTTNIVTPMDQFNKSSSAISDHNNESWKYLYLTKENLEGERKVENTMLNLQDDDDIMAAVEAFRSGGYDNNNNIMSMSTLSSNNINVLEALNNDDAVVYDPSLADEEKLAMVNGDGGSSMCNVNMEENKHYWTSILNNLVNDSLSGSSVF. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04091 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca12g04091 434 CDD SANT 69 112 IPR001005 -
Seca12g04091 434 Gene3D - 69 116 - -
Seca12g04091 434 CDD SANT 16 61 IPR001005 -
Seca12g04091 434 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 282 - -
Seca12g04091 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca12g04091 434 Gene3D - 13 66 - -
Seca12g04091 434 FunFam MYB transcription factor 68 129 - -
Seca12g04091 434 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca12g04091 434 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca12g04091 434 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca12g04091 434 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca12g04091 434 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca12g04091 434 Coils Coil 155 178 - -
Seca12g04091 434 SMART sant 66 114 IPR001005 -
Seca12g04091 434 SMART sant 13 63 IPR001005 -
Seca12g04091 434 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04091 Seca-Chr12 110202721 110204864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04091 1 272 MYB Transcription Factor Family AT3G01140 62.132 2.87e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g04091 Myb_DNA-binding 8.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04091 K09422 - gmx:100809025 544.273