Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04080 ATGGCAGAAGAAGAAGACTACTTGCAACAGCTGAGATCCAAAGCAACAGAGCTTTTCATCAGAGAAGAATGGAAAGACTCCATCGATGCCTATTCCCATTTCATCACCCTCTGCACACACCAAATCTCTCATTCCCAAACACAACACTCTGACCCACTTCACCTCCAAAAGCTTCGCAGATCCCTCTGCATAGCACTCTGCAATCGTGCTGAAGCAAGGTCCAGGTTGCGGGACTTTCACAGCGCCTTGCAAGATTGTGATCATGCTTTGGAAGTGGATGCCACCCACTTCAAGACCCTTTTGTGCAAAGGTAAGATTTTGCTCAGTCTCAACAGGTACTCCATGGCTCTGGAGTGCTTCAAAACCGCTCTGCTTGACCCTCAGGCCGGTGGAAACACGGAATGCCTTAGTGGGTACTTAGAGAAATGCAAGAAGTTTGAGTTTTTGTCAAGAACAGGGTCTCTTGATCTCTCAGAGTGGGTTTCAAATGGGTTCCCTGGAAAGGCTCCGGAACTTGCAGAGTACATTGGTGCAGTGCAGATCAGGAAATCTGAGATCAGTGGGCGTGGCCTGTTTGCAACCAAGAACATTGATGCAGGGTCCTTGATCTTGGTCACCAAGGCAATAGCAATGGAGAGAAGCATATTGGGAGGTAAAGATTTGAGTGAGGATGCACAGTTAGTGATGTGGAAGAATTTCATTGATAAAGTTGTGGACTTTGCTCGGAAATGTCATAAGACTAGGGATTTGATTGGTAAGTTGTCAAGTGGGGAAAATGAGGATGAACTTGAGGTACCTGATTTAGATCTTTTTAGGCCTGAGACTGTAGGGAACTTGCAGTCAAGTGAGGAGATTGATATGGTTAAGTTACTTGCCATATTGGATGTTAATTCTCTCACTGAGGATGCAGTTTCAGCCAATGTGTTGAGGAAGAATAATGATTGTTATGGTGTTGGGCTGTGGTTGCTCCCTGCCTTCATCAACCATTCATGCTGTCCCAATGCAAGGCGCTTGCATGTGGGGGACTACTTGATAGTTCATGCTTCCAAAGATTTGAAGGCTGGTGAAGAGATCACTTTTGCATATCTTGACCCATTGTGTCCCTTGAGCAAGAGAAAGGAGATGTCAGTTACATGGGGAATTCATTGCAAGTGTAAAAGGTGTAGGTTTGAAGGGGAAATATTTTCCAAACAAGAGATGAAAGAGATTGAGATTGGCCTTGAAAGAGGGATGGATGTGGGTGGTTTGGTGTATAAACTAGAGGAACAGATGAAGAGATGGAAGGTGAGAGGGAAAGAGAAAGCCTATTTGAGGGCATCATTTTGGTCTGCATATTCAGAGGCTTATAGGTCAGAGAGATCTATGAAGAGGTGGGGAAGGAGGATTCCAGTACTGGATGCTGTGGTTGATAGCATCACAGATGTAGTGGGAGGTGATCACAGGTTACTTAAGATCCTGATGGAGGAGTTGAAGAAAAATGGTGGTGGCCATGTGGAGATGGAGAAAGCTTTCAAGTTGGCAAGAGAGGTGTATGGAAAAGTGGTGAAAAAGCAAGCAATGAGGACACTTCTTGAGCTCTGCATTGTTGATTGA 1593 0.4507 MAEEEDYLQQLRSKATELFIREEWKDSIDAYSHFITLCTHQISHSQTQHSDPLHLQKLRRSLCIALCNRAEARSRLRDFHSALQDCDHALEVDATHFKTLLCKGKILLSLNRYSMALECFKTALLDPQAGGNTECLSGYLEKCKKFEFLSRTGSLDLSEWVSNGFPGKAPELAEYIGAVQIRKSEISGRGLFATKNIDAGSLILVTKAIAMERSILGGKDLSEDAQLVMWKNFIDKVVDFARKCHKTRDLIGKLSSGENEDELEVPDLDLFRPETVGNLQSSEEIDMVKLLAILDVNSLTEDAVSANVLRKNNDCYGVGLWLLPAFINHSCCPNARRLHVGDYLIVHASKDLKAGEEITFAYLDPLCPLSKRKEMSVTWGIHCKCKRCRFEGEIFSKQEMKEIEIGLERGMDVGGLVYKLEEQMKRWKVRGKEKAYLRASFWSAYSEAYRSERSMKRWGRRIPVLDAVVDSITDVVGGDHRLLKILMEELKKNGGGHVEMEKAFKLAREVYGKVVKKQAMRTLLELCIVD. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04080 530 ProSiteProfiles SET domain profile. 177 363 IPR001214 GO:0005515
Seca12g04080 530 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 525 - -
Seca12g04080 530 Pfam SET domain 188 362 IPR001214 GO:0005515
Seca12g04080 530 SMART set_7 177 369 IPR001214 GO:0005515
Seca12g04080 530 SMART tpr_5 97 129 IPR019734 GO:0005515
Seca12g04080 530 SMART tpr_5 63 96 IPR019734 GO:0005515
Seca12g04080 530 SUPERFAMILY TPR-like 6 124 IPR011990 GO:0005515
Seca12g04080 530 CDD SET_SMYD 291 388 - -
Seca12g04080 530 Gene3D SET domain 278 392 IPR046341 -
Seca12g04080 530 SUPERFAMILY SET domain 179 388 IPR046341 -
Seca12g04080 530 Gene3D Tetratricopeptide repeat domain 3 146 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04080 Seca-Chr12 109756010 109757602 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca12g04080 SET 4.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04080 - - mtr:11446296 895.575