Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04075 ATGGAGAGCAGAACAAGCCCTGAACTTCCCCCTGGCTTTAGGTTTCACCCAACAGATGAGGAACTAATTGTGTATTACCTTTGTAACCAAGCCACATCAAAGCCATGCCCTGCATCTATCATCCCTGAAGTGGATATCTATAAGTTTGATCCATGGGAATTGCCTGATAAAGCTGAGTTTGGAGAGAATGAATGGTATTTCTTCAGCCCAAGAGATAGGAAGTACCCAAATGGGGTGAGGCCTAATAGAGCAACTGTGTCTGGATATTGGAAGGCTACTGGGACAGATAAGGCAATCTATAGTGGATCTAAGCATATTGGGGTGAAGAAGTCTTTGGTTTTTTACAAGGGTAGGCCACCAAAGGGTGTGAAGACTAATTGGATTATGCATGAGTATAGATTAGTTGGATCTCAAAAACAAGCTAGCAAACAAATTGGGTCTATGAGGCTGGATGACTGGGTCTTGTGCAGGATCTATAAGAAGAAGAACATGGGAAAAGCATTGGAGCAAAAAGAGGAATATCCAACACTCCAAATTAGTGATTTTACAGCAGCAAATAATGATGGTGAAGAGGAAAAAATGAACCTTCCAAGGACTTGTTCCCTTACATATCTTTTGGATATGAATTATTTGGGTCCAATCTTATCTGATGGCTCCTATTGCTCACCCTTTGATTTTCAAATTAACACTGCCAATATTGGAATAGACCCTTTTGTAAAACCTGATCCGGTTGAAGAAATGACTAACCATTATGCACCAGATTCAGGGAGGTACCAATTGAAACAGAGTAGCACCATCAACCAGCCCACATTTGTGAAGCAAGTGCATCATCTGCTAGGATTTGACCAATAG 852 0.412 MESRTSPELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPDKAEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHIGVKKSLVFYKGRPPKGVKTNWIMHEYRLVGSQKQASKQIGSMRLDDWVLCRIYKKKNMGKALEQKEEYPTLQISDFTAANNDGEEEKMNLPRTCSLTYLLDMNYLGPILSDGSYCSPFDFQINTANIGIDPFVKPDPVEEMTNHYAPDSGRYQLKQSSTINQPTFVKQVHHLLGFDQ. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04075 283 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Seca12g04075 283 SUPERFAMILY NAC domain 3 161 IPR036093 GO:0003677|GO:0006355
Seca12g04075 283 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Seca12g04075 283 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Seca12g04075 283 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 195 - -
Seca12g04075 283 FunFam NAC transcription factor 18 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04075 Seca-Chr12 109654844 109656607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04075 1 214 NAC Transcription Factor Family AT1G69490 68.000 5.50e-111 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g04075 NAM 5.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04075 - - gmx:100785110 466.077