Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04065 ATGAAGGCATGGCCTGCAAGTGTTATATACTCTTCTTCACAAGAAAACAACACCAATGGCTTAAGTTGTTACCCATCTTCTTCCACTGCCCCTTCTCCTTCTATGGGAATGGTTTATGCTGACATGGGTTCTCTATCTCTTTGTTCTAACTATGGTGTGGTTTCAGCTGTTTCTACTTCTTCTTCTTCTCATGATTGCTATGTCTCAAAGAGCTTAGCTATGGAAAAAGGGGGTACAAGCTGGTCTTTACCATTCACAAGAAACTATGAGGAACATCCCAATAGTGATGTTGGGGAGGGTAAAGGGTCTGATTGCAGTGATGGGATTGGGGAAAACAGTGAGAAGATGAACCATAATAATGAAGAGAACCCTAGTGAGAATTGTGTCAGTGGCAAAGAGGCAGATACTGGGCATTCCAAACTATGTGCAAGAGGGCATTGGAGACCTGCAGAAGATTCCAAGCTCAAGGAACTTGTGGCTCTTTATGGGCCTCAGAACTGGAACCTGATAGCCGAAAAGTTAGAAGGCAGATCAGGCAAGAGCTGTAGGCTGAGATGGTTCAACCAGTTGGATCCAAGGATCAATAGGAGAGCTTTCACTGAAGAAGAGGAAGAAAGGCTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGAAGAACTGATAATGCTGTAAAGAATCACTGGCATGTTATAATGGCCAGAAAGTACAGAGAACAATCCAGTGCTTACAGGAGGAGGAGGCTAAGCCAATCTGTTTACAGAAGAATGGAGGAAAATACAAGCTTTGTCTCTAGAGACATAATCACAGGGACAGAACCACCACCACCACCACCCTATTGTCTCAATCTCCCCAATAACATGGTTAATTTCCCTTATGCTGACTTTCATGGAGCTGATGGTGGGGGTGAGTTTGGCTTAAATGGCTCACCCCACATGACTGGTGGGAAAGAAGCAATCTCAAGCAACAAGCAGGCCCCTCCTCATATTGCCTTGTATGCTCCACAGACACCACTTGATTTCTTCTCTGGTGGTAGAAGCAATGAAATGGTGGGTGAGTATTTAGGCCAGATGAGATGTTGGGAAAGGCCAAGTGATGTTCCTCTTCCTCCTCCACCTCCTTCTCAATATCAACAATCTGGTTTCTACCCTCATTACCCCCAACAATATCTGATGCTAATGCAGCAACAACAGCAAAATTACAATAACAATTTTTACAGCTTCTCAAATTCCACAGCTCCAACATCACAGATATTGGCCAGTGAACCTTCACTATCATCAGTGGCAGAACACAGAGATGAAGCCCTGACCAGTGACACCCCAGATGCAATTCCACCTCCATTTATTGACTTCCTTGGGGTAGGAGCCACATGA 1398 0.4464 MKAWPASVIYSSSQENNTNGLSCYPSSSTAPSPSMGMVYADMGSLSLCSNYGVVSAVSTSSSSHDCYVSKSLAMEKGGTSWSLPFTRNYEEHPNSDVGEGKGSDCSDGIGENSEKMNHNNEENPSENCVSGKEADTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRMEENTSFVSRDIITGTEPPPPPPYCLNLPNNMVNFPYADFHGADGGGEFGLNGSPHMTGGKEAISSNKQAPPHIALYAPQTPLDFFSGGRSNEMVGEYLGQMRCWERPSDVPLPPPPPSQYQQSGFYPHYPQQYLMLMQQQQQNYNNNFYSFSNSTAPTSQILASEPSLSSVAEHRDEALTSDTPDAIPPPFIDFLGVGAT. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04065 465 PANTHER MYB PROTEIN-RELATED 128 336 - -
Seca12g04065 465 MobiDBLite consensus disorder prediction 91 133 - -
Seca12g04065 465 Pfam Myb-like DNA-binding domain 144 190 IPR001005 -
Seca12g04065 465 Pfam Myb-like DNA-binding domain 196 239 IPR001005 -
Seca12g04065 465 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 190 IPR017930 -
Seca12g04065 465 CDD SANT 147 188 IPR001005 -
Seca12g04065 465 ProSiteProfiles Myb-like domain profile. 191 241 IPR001005 -
Seca12g04065 465 CDD SANT 198 238 IPR001005 -
Seca12g04065 465 SMART sant 143 192 IPR001005 -
Seca12g04065 465 SMART sant 195 243 IPR001005 -
Seca12g04065 465 SUPERFAMILY Homeodomain-like 144 237 IPR009057 -
Seca12g04065 465 ProSiteProfiles Myb-like domain profile. 144 190 IPR001005 -
Seca12g04065 465 FunFam MYB transcription factor 144 195 - -
Seca12g04065 465 Gene3D - 197 268 - -
Seca12g04065 465 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 245 IPR017930 -
Seca12g04065 465 FunFam MYB transcription factor 197 268 - -
Seca12g04065 465 Gene3D - 144 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04065 Seca-Chr12 109249742 109252330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04065 29 261 MYB Transcription Factor Family AT1G69560 54.393 1.47e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g04065 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04065 K09422 - vvi:100253313 524.628