Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04058 ATGGATCTGCAAAATCAAAGCATGCGTTTGGTTCTGTCTACTGATGCCAAGCCTAGGCTGAAATGGACTCCTGAGCTTCACCAACGTTTCACTGAGGCAATTAATCAGCTTGGAGGTGCAGAAAGTGAGTATAATAAAAATCTTAATGAACTTACTATTTTTGAGATTAGACTTTAG 177 0.3898 MDLQNQSMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGAESEYNKNLNELTIFEIRL. 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04058 58 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 41 IPR044848 GO:0003700
Seca12g04058 58 Gene3D - 16 56 - -
Seca12g04058 58 NCBIfam myb-like DNA-binding domain, SHAQKYF class 17 50 IPR006447 GO:0003677
Seca12g04058 58 SUPERFAMILY Homeodomain-like 16 51 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04058 Seca-Chr12 108732557 108732733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04058 1 56 G2-like Transcription Factor Family AT1G69580 53.571 6.91e-14 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca12g04058 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04058 - - rcu:8281817 79.7221