Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04053 ATGGACAGAGAAAGCCAACTCCAAGCTTCAAATTCAGGGCAACAAAGTAAAGGAACCACTTTCTTCAAAACTTGTTTCAATGGACTCAACTCCTTAGCAGGTATTGGGATACTCTCAATGCCATATGCAGTTTCTCAAGGGGGGTGGCTGAGTTTTATGCTGCTAATTATTTTTGCCATGATATGTTGGTACACAGCCTTACTTTTGCAAAGGTGTATGAATAGACATCCAATGATCAAATCCTACCCTGATATTGGGGAGGTTGCTTTTGGCTACAAAGGAAGAGCTGTTATAGCCATTTTCATATATGTAGAGCTGTTCTTAATTGCTGTGGAACTTCTTATATTAGAAGGTGACAATTTGGATAAGCTGTTTCCAAATATGAATTTCAAAATAGCTGGCATTAGAATTGGAGGTAAAAAAGGTTTTGTCCTGCTTGCTGCTTTGATAATATTACCAACGACATGGTTGAGAAGCTTGGGAGCTCTGGCCTATATTTCTGTTGGTGGGGTAGTAGCTTCTATTATTTTAATTGGTTGTGTTGTGTGGGTGGGTGAAGTTGATGGTGTTGGCTTTCATGAAAGAGGCCAGTTAGTGAATTGGGAAGGATTGCCTACTGCTATGAGCCTTTTTGCATTCTGTTACTGTGCACATGCAGTAATGCCCACACTATGCAATTCCATGAATGATAGAAGTCAGTTTTCCAAGGTTTTGCTGGTTTGCTTTGGAACGAGCACCATTATCTATGGGTCTGTGGCTATTTTAGGTTACAGCATGTTTGGAGATGAATTGAAATCTCAAATCACCTTAAATCTACCAACAAAGAAAATAAGTACTAAAATAGCCATTTATACCACAGTAATTAATCCTTTCACTAAGTATGCTGTTCTAATTACCCCAATAGTGAATGCTATTGAGGAGAAATGGCATCTTTGCAAGATCAGCAGGCCTCTTACCATGCTGGTTAGAACATCCATTGTGGTTTGCAGTGTATTTGTGGCACTATTCGTTCCATTTTTTGCATATATCATGGCGTTTATTGGTGCATTCATGAGTGTGGCAATCTCATTGTTGTTCCCTTGTATATGCTATCTGAAGATAAACAAAGCTGCTCAGCGATTTGGGATAGAATTGATCATCATCATAGGAATTCTGCTCATAGGTACAATAATTGGAATATTGGGTACCTATATCTCTGTGGGCCAGATAATAAATCATATTTGA 1224 0.3873 MDRESQLQASNSGQQSKGTTFFKTCFNGLNSLAGIGILSMPYAVSQGGWLSFMLLIIFAMICWYTALLLQRCMNRHPMIKSYPDIGEVAFGYKGRAVIAIFIYVELFLIAVELLILEGDNLDKLFPNMNFKIAGIRIGGKKGFVLLAALIILPTTWLRSLGALAYISVGGVVASIILIGCVVWVGEVDGVGFHERGQLVNWEGLPTAMSLFAFCYCAHAVMPTLCNSMNDRSQFSKVLLVCFGTSTIIYGSVAILGYSMFGDELKSQITLNLPTKKISTKIAIYTTVINPFTKYAVLITPIVNAIEEKWHLCKISRPLTMLVRTSIVVCSVFVALFVPFFAYIMAFIGAFMSVAISLLFPCICYLKINKAAQRFGIELIIIIGILLIGTIIGILGTYISVGQIINHI. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04053 407 Pfam Transmembrane amino acid transporter protein 18 394 IPR013057 -
Seca12g04053 407 PANTHER OS05G0424000 PROTEIN-RELATED 27 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04053 Seca-Chr12 108633786 108636688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04053 1 407 Amino Acid or Auxin Permease AAAP Family AT3G28960 47.561 4.59e-143 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04053 K15015 - gmx:100812006 617.461