Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04052 ATGGGCGATCATTTGGTGCTGTTTGTGGACCGTTTGGTGCGCCCTGTGCCGGTTGAGCCGCTGGCTCAACACCCGGTACAACCCGCTCCTGAGCCGTCAAAGCCGGTGGATGAAGCTGTTGCAGGCCCATCCGGTTCTTCTCCGGCGGCGGAGGATGACGGCGACATCGACGGCGAGGAGAAACCACTGCTGCAGATGGCGGAATGCCGCATTTGTCAGGAGGAGGACAGCGTCAACAATTTGGAGTCGCCGTGCGCCTGCAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGCGTCCAACATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATAAGTCCTATGAACCTGGTTATACTGCCCCACCACCCCGTCCTCATCCTGAAGAAACCACCATTGATATAGGTGGAGGTTGGACAATCTCTGGCACACCTTTGGACTTGCGTGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAATTTTTAGAAGCTGAATATGATGGATATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGTTCAGCTGCTCTAATTTTAATGGCCCTTTTACTCTTGAGGCATGCACTTTCTGTCACAGATGCTGATGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTCTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAAGAGGCTGCAGCACTGGCGGCAACCCAAGTTGCTTTCGTTCTACAATCTGGGCAGCGTAGGGGTCTGCAGTTTGCCATAGCACCAGGACCAACAGTGAATACACACCAGGAACAAGTGTAG 864 0.515 MGDHLVLFVDRLVRPVPVEPLAQHPVQPAPEPSKPVDEAVAGPSGSSPAAEDDGDIDGEEKPLLQMAECRICQEEDSVNNLESPCACSGSLKYAHRKCVQHWCNEKGDITCEICHKSYEPGYTAPPPRPHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALSVTDADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPTVNTHQEQV. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04052 287 FunFam RING/FYVE/PHD zinc finger protein 57 125 - -
Seca12g04052 287 ProSiteProfiles Zinc finger RING-CH-type profile. 61 121 IPR011016 GO:0008270
Seca12g04052 287 Pfam RING-variant domain 69 114 IPR011016 GO:0008270
Seca12g04052 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 123 IPR013083 -
Seca12g04052 287 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 248 IPR033275 -
Seca12g04052 287 Pfam Protein of unknown function (DUF3675) 120 238 IPR022143 -
Seca12g04052 287 SUPERFAMILY RING/U-box 67 119 - -
Seca12g04052 287 Coils Coil 157 177 - -
Seca12g04052 287 CDD RING_CH-C4HC3_MARCH 69 115 - -
Seca12g04052 287 MobiDBLite consensus disorder prediction 20 57 - -
Seca12g04052 287 SMART ringv_2 68 115 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04052 Seca-Chr12 108518104 108521434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04052 68 115 C3H Transcription Factor Family AT2G37950 43.137 7.70e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04052 - - ahf:112734090 486.878