Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04051 ATGGACTTGACCTCCATCAGTACCCGGAACATAGATGCAGATACTCAAACCCAACCCACTAACACCCAAACCTCCAAGTCCTTATCTTTCACCAACGGGACACTCAAACGCCACCCCCCTCCGCCGCTGCCACAACCACCGTCCATGGTGGTTTCCTACAAAGAATGCCTCAAAAATCATGCTGCCACCATAGGTGGTCATGCACTTGATGGTTGTGGTGAGTTCATGCCTTCTTCTTCCACCAACCCCACTGACCCTCGCTCCCTCAAATGTGCAGCTTGTGGTTGCCACCGCAACTTCCACCGCCGTGACCCTCAAGACCCCAACCCAAACCCCACTTTTCTCAGCTGCATCTATTCCCCTTCAGCACCACCACCACCACAACCACAACCACTACCTCACCGTGGAATTAGCCAAAGCACAAGTCCAAGCCAGAGTTCTAGTCCTAGTCACAGTCCAAGCCCCATGTCAAGCCCCTCACCACCACCACTCTCACATTTACCACCTTCTTACCACCACCATCACACTTCAGCACCTCACATGCTCTTAGCACTTGGTACTGCCTATTCTGCACCTTCCTCTGATGAGCATCATCATCACAGGAATCTCAAGTTTTCTTCTATGGTGATGAAAACTGAGATAAACCCAAGTGGGAAGAAGAGGCATAGGACGAAATTCACCAAGGAGCAGAAGGAGAAGATGTGTAGCTTTTCTGAGAAATTGGGTTGGAGAATGCAGAAAGGGGATGATGGATTGGTTCAGAAATTCTGTGATGATATTGGTGTCTCTAGAGGGGTTTTCAAGGTTTGGATGCATAATAACAAGAACACATTTAAGAAGAGATCAGAAGTGGGAAATGCTCCTCAAATGGAAAAGATCACTGGGGAAGATGATGATGGTGGAAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGATTTGATAGTGATATTAACAACCCTTACAACCCAAATAGCAGCAGCAATGACATTCACATAAATGAAGATAGCTGTGTCAATGTTCATGTTTCTCTTAATGGGTTGTCCTCTTAA 1050 0.4771 MDLTSISTRNIDADTQTQPTNTQTSKSLSFTNGTLKRHPPPPLPQPPSMVVSYKECLKNHAATIGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPQDPNPNPTFLSCIYSPSAPPPPQPQPLPHRGISQSTSPSQSSSPSHSPSPMSSPSPPPLSHLPPSYHHHHTSAPHMLLALGTAYSAPSSDEHHHHRNLKFSSMVMKTEINPSGKKRHRTKFTKEQKEKMCSFSEKLGWRMQKGDDGLVQKFCDDIGVSRGVFKVWMHNNKNTFKKRSEVGNAPQMEKITGEDDDGGSGGGGGGGGGGFDSDINNPYNPNSSSNDIHINEDSCVNVHVSLNGLSS. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04051 349 MobiDBLite consensus disorder prediction 134 153 - -
Seca12g04051 349 MobiDBLite consensus disorder prediction 154 168 - -
Seca12g04051 349 MobiDBLite consensus disorder prediction 100 177 - -
Seca12g04051 349 MobiDBLite consensus disorder prediction 1 47 - -
Seca12g04051 349 MobiDBLite consensus disorder prediction 317 332 - -
Seca12g04051 349 Gene3D - 206 280 - -
Seca12g04051 349 Pfam ZF-HD protein dimerisation region 51 105 IPR006456 -
Seca12g04051 349 MobiDBLite consensus disorder prediction 1 34 - -
Seca12g04051 349 NCBIfam homeobox domain, ZF-HD class 219 276 IPR006455 -
Seca12g04051 349 FunFam Zinc-finger homeodomain protein 2 207 280 - -
Seca12g04051 349 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 27 277 - -
Seca12g04051 349 SUPERFAMILY Homeodomain-like 211 280 IPR009057 -
Seca12g04051 349 MobiDBLite consensus disorder prediction 119 133 - -
Seca12g04051 349 MobiDBLite consensus disorder prediction 282 332 - -
Seca12g04051 349 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 104 IPR006456 -
Seca12g04051 349 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 104 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04051 Seca-Chr12 108477231 108478280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04051 19 314 ZF-HD Transcription Factor Family AT3G28920 45.246 7.44e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca12g04051 ZF-HD_dimer 5.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04051 - - vum:124843063 409.068