Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04048 ATGACACAACGACTATGTTCCTCTTTTTCCACCACCTATGAATGGACATATGATGTCTTCCTCAGTTTTAGAGGCAGTGATACTCGAAGTGGCTTCACTGGAAACCTTTATAAATCTCTTTGTGATAGGGGAATCCACACCTTCATAGATGATGATGGGGTTAGAAGAGGAGAAGAAATTACACCAGCTCTTTTCAATAAAATTGAGCAATCAAGAATTGCCATTGTTGTTTTCTCCAAAAACTATGCTTCCTCAGCTTACTGTCTTGAAGAGCTTGTCAAAATCCTTGAGTCCATAAAGAAAAAGGGTCGATTGGTCTGGCCAATTTTCTATGGAGTGAGTCCATGTTATGTGCGGTATCAAAAAGGTTCTTATGGAGAAGCATTGGTTAAGCTTGAAGAAAGATTCAAGAATGACAAGGAGAAGGTGCACAAGTGGAAGTTAGCTCTACAAGAAGCAGCTAATTTGTCTGGTTGGCATTTTGAATTCAATCACGTGGTTAGGTATGAATATGAACTTGTTCAGAAGATTGTTGAAGAAGTGTCCAAAAGGATAAATCGTAGCCCTTTACATGTGGCTGATTATCCAATTGGATTGGACTCTAGAGTGCAAGGGGTAAACTCACTTTTAGATGTTGGATCCTACCAAGGAGTCAACATTGTAGGGATTCATGGGATTGGTGGCATAGGTAAAACAACAATTGCATGTGCAGTGTTTAATCTCATTGCTGATCAATTTGAAGTTCAATGTTTTCTTGCTGATATTAGAGAAAATTCAAGGAAGTATGGTTTAGTACAACTTCAGGAGACATTGCTTTCTGAAATAGTTGGAGAGAAGAGCATCAAGTTGGGAAGTATTAATAGGGGAATGACAGTAATCAAAAGCAGGCTTCAACAAAGGAAAATTCTTTTGATTCTTGATGATGTTGATAAACTGGGGCAACTAAAAGCACTTGCTGGAGATCTTTCTTGGTTTGGTTATGGTAGCAGAATCATTATCACAACAAGGGATAAGCATTTGCTGCATGTGCATGGTGTTGAAAGAACATATGAGGCAAAAGGATTAAATCATAAAGAAGCTCTAGAGTTGTTTAGTTGGCATGCTTTTAAAAATAATGAGATTGATCCAAGCTACATCAATATCTCAAAGCGTGCAATACTTTATTCCAATGGCCTTCCATTGGCTCTAGAAATAATAGGTTCTAACTTAAATGGTAAGACAATGTCTGAATGGAAATCTGCTTTAGATACCTATGAAAGAATTCCAGATGAAGATATTCAGAAAAAACTAAAAGTAAGCTATGATGGTTTGAAAGGAAATGAGAAGGAAGTTTTCCTTGACATAGCTTGTTACTTTAGAGGTTACAATTTGAAAGATGTCATAAGTGTATTACTGCAAGGTCGTGGCTTCTCACCAGAATATGTTATTCGAGTGTTAATTGATAAATCTCTCATAAAGATTGATCAATATGGTGTTGTGAGAATGCATGCCTTGGTAGAAGACATGGGTAGAGAAATTGTTCGACAGGAATCACCATCAGAACCTGGCAAACGCAGTAGATTATGGCTCTATGATGATATTGTTGAAGTTTTAGAAAATGACAAGGGAACTGATAAAATCGAAGTAATCATGCTAAACTTGCCAAAGAATAAGGAAGTTCGGTGGAATGGATGGGAGCTGAAGAAGATGGAAAACCTGAAAATACTTACCATTGAAAATGCTTACTTTTCTAGAGGCCCAGAGCATCTCCCAAACAGCTTGAGAGTGCTAAAATGGTGGGGATATCCTTCACCATCTCTGCCACCTGAATTTGATCCAAGGAGACTTGTCATGCTAGACTTGTCTATGAGTTGCAATAGATTGGATAAACAACTTGAACTCATGCAGAAGTTTGAGTCTTTGAGTGAAGTAGTTTTCAAAGGCTGTAAATCCATAAAAAAAGTACCTGACATGTCTGGAGCACCAAAATTAACAAAGTTGTGTCTTGATAACTGCAAGAATTTACTAGAAATTCATGATTCCATTGGGTTTCTTGATAAACTTGCACGGTTGACTGCTGTTGGATGCACCAATCTAAGGATTCTTCCCCACAGCTTCAAGTTAACATCTCTTGAATATCTATCTCTTAGAAAATGCTCAAGTCTCCACAATTTTCCAAATATATTAGACGAAATGAAACATATAGAAAATCTCGATCTGTGTGGAACAGCTATAGAAGCATTACCATTTTCATTTAGCAAACTCATTGGGCTTAAATATTTGGTGCTGGACAAATGTAAGATGCTTCATAGCATACCGAGAAGTATTTTGATGTTACCAAAACTTGAGAGGTTGACAGCTGTAAAATGTGGATGGAATGCAAATTTGATTCTTGGCAAAGGTGAAGAACATGGAAAATTGGGTTCATTCAAGTCTTCAAATGTTAGATTAGACCACTACAGTTTGACACCTAATCACTTCCCCAATGTAGAATTCTTGGACCTAACTTGCAGTTCTCTCAAAATCCTTCCTGAATGCATCAGTGAATGTCGCTTTGTGAAGAATCTAGTTTTGGATAATTGCAAAGAGCTTCAAGAAATCAGAGGGATTCCTCCAAAGATAAAATATCTCTCGGCAATAAACTGCATATCATTGACTCATGAGTCTCAGAGCATGTTATTGAGTCAGAGATTACATGAGGGTGGAGGCACAGATTTTTCTCTTCCAGGACTAAATATACCAGAATGGTTCGACCACTATACCATTGGAACATCCTTGTCTTTCTGGTTTCGTAACAAATTCCCAAGGATGGCTCTAGCTGTTATTGGAGTTTTAGACAAGCAGGGCAATTTTCCCAGTTCAATATTCCACTTGGTCATCAATGGGATTCAAAAGTTGCATTGCAATTTCACTGTGCAATCAAAACTTGTAACATATCATATATTTTTGACTGATGTACATCTCAAATGCTACAATGGAGAATTGGGAATTGTTTATAGGGAAGATGGGTGGAACCATGTTGAGGTTTCATATGTGGGACCAAGTAAAAGGGATTTTCCACACACATGCAAAGCAAAGAAAGGAATCATAAAATGGATGGGAGTTTATGTGTACAAGCAAAATACAAGCATGGAGGATGTCAGGTTTACAAATCCAAAGTCTCTAAAGAGAGCATATAATGATTTTTTCATGCCTGATTTGGACCAAAAATTTCAACCATGTCCTAAAAAGAATTGTGGATCACAAGGCATGGAAATCTGTGAGGCACCATATATAGAGAAACATCAAGTTAAAAGTGGTTATCAAGCTGTATCACAGAGTTTATGGTTTGAAATTCACAGCATTGAAGCTCCTTCAAATGTAAAAATACTAATGTGGAATATTTGCCAAAATTCTTTACCAACTTATGAGTATCTTTTCAAGAGGAAGCTGGTAAATAGCCCACTCTGTCCCATTTGTGGAACAGAACCTGAGACTGTTGAGCATGTGTTTCTGTCTTGCCCGTGGACTCGACCCCTTTGGTTTGGAAGTGATTTCCAGTGGATTATTGATGTCAATTCAGTTCAAAGCTTTCAACTTTGGCTGTGTCAGAAGCTTGAGGAGATTAAAAGGGTACATCCAAATAATGTCAACTTGTTATGTGCTCTTGTGGGGAATATTTGTTGGGCTATTTGGAAGGGAAGGAATGAATTTGTTCTTGAAGGCCAACATGTTAATCCTTTGATTTTAAGGTAG 3714 0.3756 MTQRLCSSFSTTYEWTYDVFLSFRGSDTRSGFTGNLYKSLCDRGIHTFIDDDGVRRGEEITPALFNKIEQSRIAIVVFSKNYASSAYCLEELVKILESIKKKGRLVWPIFYGVSPCYVRYQKGSYGEALVKLEERFKNDKEKVHKWKLALQEAANLSGWHFEFNHVVRYEYELVQKIVEEVSKRINRSPLHVADYPIGLDSRVQGVNSLLDVGSYQGVNIVGIHGIGGIGKTTIACAVFNLIADQFEVQCFLADIRENSRKYGLVQLQETLLSEIVGEKSIKLGSINRGMTVIKSRLQQRKILLILDDVDKLGQLKALAGDLSWFGYGSRIIITTRDKHLLHVHGVERTYEAKGLNHKEALELFSWHAFKNNEIDPSYINISKRAILYSNGLPLALEIIGSNLNGKTMSEWKSALDTYERIPDEDIQKKLKVSYDGLKGNEKEVFLDIACYFRGYNLKDVISVLLQGRGFSPEYVIRVLIDKSLIKIDQYGVVRMHALVEDMGREIVRQESPSEPGKRSRLWLYDDIVEVLENDKGTDKIEVIMLNLPKNKEVRWNGWELKKMENLKILTIENAYFSRGPEHLPNSLRVLKWWGYPSPSLPPEFDPRRLVMLDLSMSCNRLDKQLELMQKFESLSEVVFKGCKSIKKVPDMSGAPKLTKLCLDNCKNLLEIHDSIGFLDKLARLTAVGCTNLRILPHSFKLTSLEYLSLRKCSSLHNFPNILDEMKHIENLDLCGTAIEALPFSFSKLIGLKYLVLDKCKMLHSIPRSILMLPKLERLTAVKCGWNANLILGKGEEHGKLGSFKSSNVRLDHYSLTPNHFPNVEFLDLTCSSLKILPECISECRFVKNLVLDNCKELQEIRGIPPKIKYLSAINCISLTHESQSMLLSQRLHEGGGTDFSLPGLNIPEWFDHYTIGTSLSFWFRNKFPRMALAVIGVLDKQGNFPSSIFHLVINGIQKLHCNFTVQSKLVTYHIFLTDVHLKCYNGELGIVYREDGWNHVEVSYVGPSKRDFPHTCKAKKGIIKWMGVYVYKQNTSMEDVRFTNPKSLKRAYNDFFMPDLDQKFQPCPKKNCGSQGMEICEAPYIEKHQVKSGYQAVSQSLWFEIHSIEAPSNVKILMWNICQNSLPTYEYLFKRKLVNSPLCPICGTEPETVEHVFLSCPWTRPLWFGSDFQWIIDVNSVQSFQLWLCQKLEEIKRVHPNNVNLLCALVGNICWAIWKGRNEFVLEGQHVNPLILR. 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04048 1237 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 776 IPR044974 GO:0006952
Seca12g04048 1237 ProSiteProfiles TIR domain profile. 15 185 IPR000157 GO:0007165
Seca12g04048 1237 Pfam TIR domain 17 186 IPR000157 GO:0007165
Seca12g04048 1237 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 159 IPR035897 -
Seca12g04048 1237 SMART till_3 16 156 IPR000157 GO:0007165
Seca12g04048 1237 Gene3D - 10 182 IPR035897 -
Seca12g04048 1237 Gene3D - 183 347 IPR027417 -
Seca12g04048 1237 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 187 - -
Seca12g04048 1237 Pfam NB-ARC domain 216 434 IPR002182 GO:0043531
Seca12g04048 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 448 IPR027417 -
Seca12g04048 1237 Gene3D - 354 438 IPR042197 -
Seca12g04048 1237 Pfam zinc-binding in reverse transcriptase 1094 1167 IPR026960 -
Seca12g04048 1237 Gene3D Ribonuclease Inhibitor 700 893 IPR032675 -
Seca12g04048 1237 Gene3D Ribonuclease Inhibitor 542 699 IPR032675 -
Seca12g04048 1237 PRINTS Disease resistance protein signature 220 235 - -
Seca12g04048 1237 PRINTS Disease resistance protein signature 389 403 - -
Seca12g04048 1237 PRINTS Disease resistance protein signature 296 310 - -
Seca12g04048 1237 PRINTS Disease resistance protein signature 699 715 - -
Seca12g04048 1237 SUPERFAMILY L domain-like 511 886 - -
Seca12g04048 1237 SUPERFAMILY "Winged helix" DNA-binding domain 425 532 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04048 Seca-Chr12 108401943 108407271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04048 9 841 WRKY Transcription Factor Family AT4G12020 32.164 9.43e-94 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04048 - - aprc:113858280 1933.3