Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04045 ATGCTTCATGTGGACAGGATTGGCTTCGGGCTATCTGAATTCATTAAGGTGTCTACAACTATGAAGCCACAAATCCACATGAAGCAACATTCAATTGGGATCATCCACATGCTAGAAACAAGATGGAATATGTTAGTTTTGGCCACTATGCTCTTGAGGCTATCTGAATTCATTAAGATGTCTACAACTCTGAAGCCACCAATCCACATGAAGCAACGTTCAATTATGATCATCCACATGCTAGAAACAAGATGGAATTTGTCAATTTTCGCCACTATGTTCTTGAGGAGCTACAGTTCAAGAAATCATGAAAACGAGCTTCGATTATATGTGGATAATGGTTTGGCTCACTATGGTCAAATGATGAACCTCAAGAGCATAGTGGCCAAAACTGACATATTCCATCTTATTTCTAGCATGTGGATTATTCCAATTACACGTTGCTTCATGTGGACAGGATTGGCTTCAGGCTATCTGAATTCATTAAGGCTATCTGAATTCATTAAGCTGTCTACAACTTTGAAGCCACCAATCCACATGAAGCAACGTTCAAATGGGATCATCCACATGCTAGAAAGAAGATGGAATTTGTCAGTTTTGGCCACTATGCTCTTGATGTTCAACATTAGATCATAG 636 0.3931 MLHVDRIGFGLSEFIKVSTTMKPQIHMKQHSIGIIHMLETRWNMLVLATMLLRLSEFIKMSTTLKPPIHMKQRSIMIIHMLETRWNLSIFATMFLRSYSSRNHENELRLYVDNGLAHYGQMMNLKSIVAKTDIFHLISSMWIIPITRCFMWTGLASGYLNSLRLSEFIKLSTTLKPPIHMKQRSNGIIHMLERRWNLSVLATMLLMFNIRS. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04045 211 PANTHER TRANSCRIPTION FACTOR TGA9 100 153 - -
Seca12g04045 211 Pfam Seed dormancy control 98 153 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04045 Seca-Chr12 108318354 108322341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04045 104 170 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 53.731 1.56e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04045 K14431 - gmx:100815176 88.1965