Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04042 ATGGAAGAGAGAAATGATGGTGAGAAACTTGATGAGGTTCTGCTACCAGGATTCAGGTTTCATCCAACTGATGAAGAGCTTGTTGGATTTTATCTCAAAAGAAAGATTCAGCAGCGGTCTCTCTCTATTGAGCTCATCAAGCAGCTTGATATATATAAATATGATCCTTGGGATCTTCCAATAGAGTTGGCCACTACTGGGGAGAAGGAGTGGTATTTCTACTGTCCTAGAGATAGAAAGTACAGGAACAGTGCAAGGCCTAATAGGGTCACAGGAGCTGGGTTTTGGAAAGCTACAGGCACTGACAGGCCTATATACTCTTCAGAAGGTTCTAGATGTATTGGCCTCAAGAAGTCCCTTGTGTTCTACAAAGGTAGAGCTGCTAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTTAGGCTTCCTTCTCTCACTAACTCATCATCTTCCCCTAAGAAGTACTTGGATAAGAACATTCCTCCTAATGAATCTTGGGCAATCTGCAGGATATTCAAGAAAACCAATGCTACAGTTCAAAGAGCTCTCACTCATCACTCTTGGGTTCCTCCCTTACCTGAAGCAACTACAGCTGATATGCTAACCAATGGTGGAGATGGAAACCAATTTTGTTTACCAAACATGTCATTATTGACAAAGAAACCTAGCTTAGCCACTCACTTTTGCACAGTTAACCACAATGACACACAACACTTAACCACTCCTAGTAGTAGTACTCTTTGTCCTTTAGATGTTGCCTACAATAAGTCCATTAATGTTAATCCATTGCTTTCCAAACCCTTTGATCGGTTACCAACTTCAAATGGAGACCATAGCTCAATATTCTCATCACCTCTTGAAACATCTTCAATTAGTACTAAATCATCTTCAAGGGATTTTTCTTCCTTGCTATTGAGTATGTCATCTTCTGTGCTTGGAGATTTTGGTAAGACCTCTGAGGAAACAACCCCAAACTTTGGTGGGTTACAAGAGCATAGTCATGGCTACCCAATACCATTACTACGTGAAATGCAAGGGGCTATTGGCAACCAAGATGATAATGTATTGGTAAAAATTCCAAATGTGAATGTGCCTCATGTTGATGTTCCTTTCAATATGCCTTTCAATATTGATGATGCATGGAAGTTGAAATCGCTTTGGGATACTACTTCTTCCTCCTGTCCTTCTGATGCTCCCTCTAGTTATTCTACAACTAAGTGTTATACTTAG 1230 0.4041 MEERNDGEKLDEVLLPGFRFHPTDEELVGFYLKRKIQQRSLSIELIKQLDIYKYDPWDLPIELATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSRCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTNSSSSPKKYLDKNIPPNESWAICRIFKKTNATVQRALTHHSWVPPLPEATTADMLTNGGDGNQFCLPNMSLLTKKPSLATHFCTVNHNDTQHLTTPSSSTLCPLDVAYNKSINVNPLLSKPFDRLPTSNGDHSSIFSSPLETSSISTKSSSRDFSSLLLSMSSSVLGDFGKTSEETTPNFGGLQEHSHGYPIPLLREMQGAIGNQDDNVLVKIPNVNVPHVDVPFNMPFNIDDAWKLKSLWDTTSSSCPSDAPSSYSTTKCYT. 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04042 409 SUPERFAMILY NAC domain 13 174 IPR036093 GO:0003677|GO:0006355
Seca12g04042 409 FunFam NAC domain-containing protein 35 23 177 - -
Seca12g04042 409 ProSiteProfiles NAC domain profile. 14 174 IPR003441 GO:0003677|GO:0006355
Seca12g04042 409 Gene3D NAC domain 23 179 IPR036093 GO:0003677|GO:0006355
Seca12g04042 409 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 265 - -
Seca12g04042 409 MobiDBLite consensus disorder prediction 390 409 - -
Seca12g04042 409 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04042 Seca-Chr12 108269446 108271401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04042 2 335 NAC Transcription Factor Family AT1G26870 52.381 1.00e-112 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g04042 NAM 4.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04042 - - vra:106768003 535.413