Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04022 ATGGAGGAGGGTAAAAAAACCAAAGGAAAACAAAAGATTGAGATTAAGAAGATTGATAAAGCAAATGATCTTTCTAGTACTTTCGCAAAGCGAAAATATGGTGTTCACAAGAAGGCTTATGAGTTATCAACACTTTGTGGGGCTAGGGTTGATATACTCATGTTTTCTCCGTGTGGAAGATCATTCTGTTATGGGGATCCTTCTCTCCGATTGTTGACAAAGACAACTTCAGATGATGAGCACCCTTTAGAAGGTGTCAACTATGATCAACTTGTAGAGGATCACAAGAGATCGGAGATCGATGAACTCAACGAAAAACATGATGCACATCAAGATCAATTGTATGTTGAGAAAGCACGTGAGAAAAAACTAAAGGACATATTGAAGGCAAGGAAAAACGATGGCTGGTGGGAGGCCAAAGTACAAGGTCTTAGTTGTGAACATGCTCAGGAAATTGAAGCAAGTCTTTTAGAATTACATGAAAAATTGTCAAATGAACTTCCAATCAAGTGTGGAGGAAATGCTTCTCATGGTATGGTCTCTTCAACTTAA 552 0.3841 MEEGKKTKGKQKIEIKKIDKANDLSSTFAKRKYGVHKKAYELSTLCGARVDILMFSPCGRSFCYGDPSLRLLTKTTSDDEHPLEGVNYDQLVEDHKRSEIDELNEKHDAHQDQLYVEKAREKKLKDILKARKNDGWWEAKVQGLSCEHAQEIEASLLELHEKLSNELPIKCGGNASHGMVSST. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04022 183 Coils Coil 93 113 - -
Seca12g04022 183 PANTHER MADS BOX PROTEIN 10 163 - -
Seca12g04022 183 SUPERFAMILY SRF-like 9 70 IPR036879 GO:0003677|GO:0046983
Seca12g04022 183 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca12g04022 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 62 IPR002100 GO:0003677|GO:0046983
Seca12g04022 183 Gene3D - 21 84 IPR036879 GO:0003677|GO:0046983
Seca12g04022 183 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca12g04022 183 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca12g04022 183 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca12g04022 183 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04022 Seca-Chr12 107652762 107653313 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04022 3 176 Type I MADS-box Gene Family AT3G04100 33.516 9.36e-26 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca12g04022 SRF-TF 1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04022 - K12412 gmx:102665718 167.548