Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04016 ATGGAGGAGGGTAAAAAAACCAAAGGAAAACAAAAGATTGAGATTAAGAAGATTGATAAAGCAAATGATCTTTCTAGTACTTTCACAAAGCGAAAATATGGTGTTCACAAGAAGGCTTATGAGTTATCAACACTTTGTGGGGCTAGGGTTGATATACTGATGTTTTCTCCATGTGGAAGATCATTCTGTTATGGGGATCCTTCTCTCCGATTGTTGACAAGGACAATTTCAGATGATGAGCACGGTTTAGAAGGTGTCAACTATGATCAACTTGTAGAGGATCACAAGAGATCGGAGATCGATGAACTTAATGAAAAATATGATGCACATCAAGATCAATTGTATGTTGAGAAAGCACGTGAGAAAAAACTAAAGGACGTATTGAAGACAAGGAAAAATGATGTATGGTAG 411 0.3674 MEEGKKTKGKQKIEIKKIDKANDLSSTFTKRKYGVHKKAYELSTLCGARVDILMFSPCGRSFCYGDPSLRLLTRTISDDEHGLEGVNYDQLVEDHKRSEIDELNEKYDAHQDQLYVEKAREKKLKDVLKTRKNDVW. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04016 136 PANTHER MADS BOX PROTEIN 10 124 - -
Seca12g04016 136 Gene3D - 21 83 IPR036879 GO:0003677|GO:0046983
Seca12g04016 136 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca12g04016 136 SUPERFAMILY SRF-like 9 73 IPR036879 GO:0003677|GO:0046983
Seca12g04016 136 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Seca12g04016 136 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca12g04016 136 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca12g04016 136 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca12g04016 136 Coils Coil 93 120 - -
Seca12g04016 136 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 62 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04016 Seca-Chr12 107405889 107406299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04016 5 104 Type I MADS-box Gene Family AT4G36590 41.346 7.78e-22 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca12g04016 SRF-TF 3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04016 - K12412 ccaj:109813207 119.398