Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03995 ATGAGAGCCATAGGATCACTTGTGAGCACCACCATCTTGTACCCTCTTGACACCTGCAAGACCAAGTTCCAAGCTGAGGTTCCTTCCAATGGCCAAAGGAAATACAGGAACCTCTCTGATGTGTTATGGGAAGCAATATCTACTGGTCAGGTGGTTTCACTTTACCAGGGCCTTGGAACCAAAAATCTCCAATCTTTTGTTTCACAGTTTGTCTACTTCTATGGCTATAGCTACTTTAAAAGACTGTACCTGGATAAAAGTGGTTTTAAATCCATTGGAACCAAAGCAAACTTGGTAATTGCTGCTGCTGCTGGGGCCTGCACAGCCATTGTGACTCAGCCCCTGGATACAGCCTCTTCAAGGATGCAGACAAGTGCTTTTGGAAAGTCTAAAGGGCTATTGAAGACCCTTGCAGAAGGCACTTGGAGTGATGCATTTGATGGCCTCAGCATTTCCTTGCTGCTGACCTCAAACCCTGCAATTCAGTATACAGTGTTTGATCAGCTGAAACAACGAGCACTGAGGAATATACAACACAAAGATGATAATAGATCATCTCCAGCATCTCTTCCTGCATTTATGGCCTTTCTTCTTGGTGCTATTTCAAAGAGTGCTGCTACCTTTCTAACATATCCTGCTATCAGGTGCAAGGTGATGATTCAAGCTGCTGACTCAGATGAACAAAGCTCCAAAACAAAGGCAAAACCACAGAAAACAGTGTCTGGAGTTCTCTATGCAATATGGAAAAGGGAGGGTATAATAGGATTTTTCAAAGGATTGCAGGCTCAGATTTTAAAAACAGTTTTGAGCTCAGCACTGCTTTTAATGATCAAGGAGAAGATCTCTGCCTCTTCTTGGTTTCTTATACTTGCTGTTAGAAGGTATCTATTGCTCCCAAGGGGTAGAGTCAAAAACTTATAA 921 0.4278 MRAIGSLVSTTILYPLDTCKTKFQAEVPSNGQRKYRNLSDVLWEAISTGQVVSLYQGLGTKNLQSFVSQFVYFYGYSYFKRLYLDKSGFKSIGTKANLVIAAAAGACTAIVTQPLDTASSRMQTSAFGKSKGLLKTLAEGTWSDAFDGLSISLLLTSNPAIQYTVFDQLKQRALRNIQHKDDNRSSPASLPAFMAFLLGAISKSAATFLTYPAIRCKVMIQAADSDEQSSKTKAKPQKTVSGVLYAIWKREGIIGFFKGLQAQILKTVLSSALLLMIKEKISASSWFLILAVRRYLLLPRGRVKNL. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03995 306 SUPERFAMILY Mitochondrial carrier 3 280 IPR023395 -
Seca12g03995 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 190 284 IPR018108 -
Seca12g03995 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 92 172 IPR018108 -
Seca12g03995 306 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE TRANSPORTER 1 3 305 IPR045900 GO:0005347|GO:0006635|GO:0015217
Seca12g03995 306 Pfam Mitochondrial carrier protein 190 281 IPR018108 -
Seca12g03995 306 Pfam Mitochondrial carrier protein 4 86 IPR018108 -
Seca12g03995 306 Pfam Mitochondrial carrier protein 92 172 IPR018108 -
Seca12g03995 306 PRINTS Mitochondrial carrier protein signature 55 73 IPR002067 GO:0055085
Seca12g03995 306 PRINTS Mitochondrial carrier protein signature 8 26 IPR002067 GO:0055085
Seca12g03995 306 PRINTS Mitochondrial carrier protein signature 101 123 IPR002067 GO:0055085
Seca12g03995 306 FunFam Peroxisomal adenine nucleotide carrier 1 1 285 - -
Seca12g03995 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 82 IPR018108 -
Seca12g03995 306 Gene3D Mitochondrial carrier domain 1 285 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03995 Seca-Chr12 106187064 106189346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03995 11 273 Chloroplast and Mitochondria Gene Families AT1G25380 28.421 1.40e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03995 - - gmx:100301879 495.352