Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03986 ATGTCATCATCGAATTCTCCATGCGCGGCATGTAAGATTCTTCGTCGCAAGTGCAAACAAGAGTGTATTTTTGCTCCGTACTTTCAGCCAGAGAACCCACAACGGTTCATATGTGTGCACCGTGTGTTCGGTGCTAGCAACGTGGCAAAACTTTTGAAGGAGTTGAGGATGTCGCAGCGAGGCGATGCCGTTAGGTCACTGGCCTATGAGGCTGAGGCACGTTTGAGGGACCCCGTCTACGGGTGCGTTGGGTTCATCTCGGTGCTTCAGCAGCGACTGAAGCAAATCCAAACCAAGCTTGAGAATGCTAAGAAGGAATTGACTACTTACCTTAGCCCACAAGCTATGGAGTACTTTCTGGCCAATCCCAGTGCGTTACTCACGAAACAAAATAACTCACAGGGGAACCCGTTCGTGCTTTTTCCTAACTACATTCCGCCGATTTTGTCGAGCCATGAGGGCGGACATTTGGGGCTTATGGATACTCAGCATCTTGCTGTTGTGGCAGAGCAAAAGCGGGTCATGGTCCAGCGAGAACAGCAAAAGTTTCTGAGGTTCGAAAAGGTTAGTTCAGTTGCAGTTGCAGTTGGTGGTGGTAGTGGGTTTGGTCACCAGATGGGTGTTTCTCTTCCTTCTGCTCCTGTTCATGCTGCTGATCAAATGCAACCTTCTTTGGCTATGGGAACCTTTGAAAATATTGGAATTCACCAGCAACCACCACAGAAGCAAATGGAACAACAACAACATGTTCCTCTTCACCCTCCTATTGAGGCACAATTGCTGCTTTCACCACAACAATCATGGCAACAACCCAATCAGTCTGAAAGTGAGGGTGGTAGGAGCATTGGTCCTTCTTCTTATTGA 864 0.4826 MSSSNSPCAACKILRRKCKQECIFAPYFQPENPQRFICVHRVFGASNVAKLLKELRMSQRGDAVRSLAYEAEARLRDPVYGCVGFISVLQQRLKQIQTKLENAKKELTTYLSPQAMEYFLANPSALLTKQNNSQGNPFVLFPNYIPPILSSHEGGHLGLMDTQHLAVVAEQKRVMVQREQQKFLRFEKVSSVAVAVGGGSGFGHQMGVSLPSAPVHAADQMQPSLAMGTFENIGIHQQPPQKQMEQQQHVPLHPPIEAQLLLSPQQSWQQPNQSESEGGRSIGPSSY. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03986 287 Coils Coil 86 106 - -
Seca12g03986 287 MobiDBLite consensus disorder prediction 237 287 - -
Seca12g03986 287 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Seca12g03986 287 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 238 - -
Seca12g03986 287 MobiDBLite consensus disorder prediction 260 287 - -
Seca12g03986 287 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03986 Seca-Chr12 105899737 105900600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03986 1 116 AS2 family AT5G66870 75.000 8.08e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca12g03986 LOB 5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03986 - - gmx:100796406 232.646