LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g03984	ATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAGGAACTAAACCAGCTAGAGAAGTTCAAGCCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGAAGGAGAAGGTTCTTATCTTTTTCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTAGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAATTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAGCTTATGCTGAAGGTATTAGTCTTACTGCAGTTTCTCGGTTGATATTTTTGGACTCGGAATGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGATTTTTCGGAGAACCCTTCCCAGTGGAAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATACGATTATGAAGAATGAAAAAGTTTCAACAAACTGA	612	0.3889	MVTLGSIHPWLIKTATSSNKFYTSQELNQLEKFKPDFRVGSKVRFILSLIIRVVKKEKVLIFFRNLAPMKLLVQLFEECFKWKKGREILLLYGEQDLFERGKVIDNFEDPCGVSKVLLASITAYAEGISLTAVSRLIFLDSEWNPSKIKQAIARAFRPGQDFSENPSQWKAEKIEDDILREMVENDNPKAIHTIMKNEKVSTN.	204

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g03984	203	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	45	201	IPR001650	-
	Seca12g03984	203	CDD	SF2_C_SNF	39	160	-	-
	Seca12g03984	203	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	2	160	IPR044567	GO:0080188
	Seca12g03984	203	SMART	helicmild6	70	159	IPR001650	-
	Seca12g03984	203	Pfam	Helicase conserved C-terminal domain	42	158	IPR001650	-
	Seca12g03984	203	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	13	162	IPR027417	-
	Seca12g03984	203	Gene3D	-	5	199	IPR027417	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g03984	Seca-Chr12	105843994	105844713	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g03984	85	160	RAD5 or RAD16-like Gene Family	AT5G05130	42.857	8.59e-09	52.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g03984	K10875		-	csv:101215377	272.707

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