Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03984 ATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAGGAACTAAACCAGCTAGAGAAGTTCAAGCCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGAAGGAGAAGGTTCTTATCTTTTTCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTAGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAATTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAGCTTATGCTGAAGGTATTAGTCTTACTGCAGTTTCTCGGTTGATATTTTTGGACTCGGAATGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGATTTTTCGGAGAACCCTTCCCAGTGGAAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATACGATTATGAAGAATGAAAAAGTTTCAACAAACTGA 612 0.3889 MVTLGSIHPWLIKTATSSNKFYTSQELNQLEKFKPDFRVGSKVRFILSLIIRVVKKEKVLIFFRNLAPMKLLVQLFEECFKWKKGREILLLYGEQDLFERGKVIDNFEDPCGVSKVLLASITAYAEGISLTAVSRLIFLDSEWNPSKIKQAIARAFRPGQDFSENPSQWKAEKIEDDILREMVENDNPKAIHTIMKNEKVSTN. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03984 203 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 45 201 IPR001650 -
Seca12g03984 203 CDD SF2_C_SNF 39 160 - -
Seca12g03984 203 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 160 IPR044567 GO:0080188
Seca12g03984 203 SMART helicmild6 70 159 IPR001650 -
Seca12g03984 203 Pfam Helicase conserved C-terminal domain 42 158 IPR001650 -
Seca12g03984 203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 162 IPR027417 -
Seca12g03984 203 Gene3D - 5 199 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03984 Seca-Chr12 105843994 105844713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03984 85 160 RAD5 or RAD16-like Gene Family AT5G05130 42.857 8.59e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03984 K10875 - csv:101215377 272.707