Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03983 ATGAATACTTCTCATTATGAGCCTTTATCAATAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGTTGCATGACTATCAGAAGAAAGGTTTTCAATTTATTTGGCAAAATATTGCAGGGTCATTAAAACCAACACTTATGGAAGAAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCTTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAACTTTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAAAGTTCATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAGGAAGTGCTGAAAGAATTAGATACAAAACAAAAAAAGGGAAATGATAAAATTCCAGAGAAAGCAAAAAATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCATGTGATCATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTGTATAGATGTTTATGAGAGTGGGAATTCTGAAAAGCTTCTTGGTTTGCAAAATTTATACTCTGCTTATGAACCTAACTGA 771 0.3567 MNTSHYEPLSIENDNVWSLIPELSKKLHDYQKKGFQFIWQNIAGSLKPTLMEEKSERRGGCVISHTLGAGKTFLVIAFLVMGYTSFLSLTRENSKYEHKKYMAKTLRESTGILILDEGHNPRSTKSRLRKKFMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKGNDKIPEKAKNLLETRARKFFLDDIANKIDSCDHEVRMQGLNMLRKITSGCIDVYESGNSEKLLGLQNLYSAYEPN. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03983 256 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 80 IPR044567 GO:0080188
Seca12g03983 256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 172 IPR027417 -
Seca12g03983 256 Pfam SNF2-related domain 85 179 IPR000330 GO:0005524|GO:0140658
Seca12g03983 256 Gene3D - 4 92 IPR038718 -
Seca12g03983 256 Gene3D - 110 205 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03983 Seca-Chr12 105842889 105843917 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca12g03983 SNF2_N 3e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03983 K10875 - mnt:21390362 252.677