Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03982 ATGAAGGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGAAAAATATTGCACGGTCAATACAACCAACACTTATGGAAGAAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGTCTTTCTTGTTTGCTACTTAAAGCTATTCCCAGATAAAAAACCTCTCATCCTTGCTCCAAACACTACACTATATACTTGGTACAAGGAATTCAGAAAGTGGGAGATTCCTATTCCAGTGTATCTGATTCGCGATCGTAAGAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTGGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGAGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAATTCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTACCAAAATTGACTCATGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGAAAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTACAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCATTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAGGAACTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAATGGTAGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGTGAAAGTGATTGATAATTTTGAGGATGCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGCTATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAGTGAGGATTTTTCGGAGAACCCTTCCCAGTGGAAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATATGATTATGAAGAATGAAAAAGCTTCAACAAACTAA 1824 0.386 MKASHYEPLSIENDNVWSLIPELSKKMHDHQKKGFQFIWKNIARSIQPTLMEEKSERRGGCVISHTPGAGKTFLVIVFLVCYLKLFPDKKPLILAPNTTLYTWYKEFRKWEIPIPVYLIRDRKNLRDFDETPLTIPGVPNPTGDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRENSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLRKELMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKGNDKIPEKAKHLLETRARKFFLDDIATKIDSCDDEVRMQGLNMLRKITSGFIDVYESGNSEKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFHLEGELMVTLGSIHPWLIKTATSSNKFYTSQELNQLEKFKSDFRVGSKVRFILSLIIRVVKEEKVLIFCRNLAPMKLLVQLFEECFKWKNGREILLLYGEQDLFERVKVIDNFEDACGVSKVLLASITACAEGISLTAASRLLFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFSENPSQWKAEKIEDDILREMVENDNPKAIHMIMKNEKASTN. 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03982 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 251 IPR014001 -
Seca12g03982 607 CDD SF2_C_SNF 402 538 - -
Seca12g03982 607 Gene3D - 4 289 IPR038718 -
Seca12g03982 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 574 IPR001650 -
Seca12g03982 607 Gene3D - 330 607 IPR027417 -
Seca12g03982 607 Pfam Helicase conserved C-terminal domain 410 526 IPR001650 -
Seca12g03982 607 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 606 IPR044567 GO:0080188
Seca12g03982 607 SMART ultradead3 23 263 IPR014001 -
Seca12g03982 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 253 IPR027417 -
Seca12g03982 607 SMART helicmild6 438 527 IPR001650 -
Seca12g03982 607 Pfam SNF2-related domain 48 355 IPR000330 GO:0005524|GO:0140658
Seca12g03982 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 589 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03982 Seca-Chr12 105819756 105821579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03982 453 545 RAD5 or RAD16-like Gene Family AT5G05130 40.426 1.10e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca12g03982 SNF2_N 1.1e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03982 K10875 - gmx:100811703 875.544