Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03981 ATGAAGGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAAAATATTGCAGGGTCAATACAACCAACACTTATGGAAGAAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTTGCTACTTAAAGCTATTCCCAGATAAAAAGCCTCTCATCCTTGCTCCAAAAACTACACTATATACTTGGTACAAGGAATTCAGCAAGTGGGAGATTCCTATTCCAGTGTATCTGATTCGCGATCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTAGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGAGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGAAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAATTCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCATGTGATGATGAAGTGCGGATGAAGGGTTTGAACATGTTGAGAAAAATCACAAGTTGTTTTATAGATGTTTATAAGAGTGGGAATTCTGAAAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTAATGTGCAGAATGAGCTTTTACAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTCCCATTTGGAGGGAGAGCTTATGGTAACCTTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAGGAACTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGACAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTAGAGAAATTTTGTTACTATATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAATTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTTGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTTGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAGGGAGGATTTTTCGGAGAACCCTTCCCAGTGGAAAACAGAGAAGATTAAAGATGATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATATGATTATGAAGAATGAAAAAGCTTCAACAAACTGA 1824 0.3827 MKASHYEPLSIENDNVWSLIPELSKKMHDHQKKGFQFIWQNIAGSIQPTLMEEKSERRGGCVISHTPGAGKTFLVIAFLVCYLKLFPDKKPLILAPKTTLYTWYKEFSKWEIPIPVYLIRDRKNLRDFDETPLTIPGVPNPTSDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRENSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLRKELMKVETELRILLSGTLFQNNFGEYFNTLCLERPKFVQEVLKELDTKQKKGNDKIPEKAKHLLETRARKFFLDDIANKIDSCDDEVRMKGLNMLRKITSCFIDVYKSGNSEKLPGLQIYTLLMNLTNVQNELLQKLQKKMVGSSVSHLEGELMVTFGSIHPWLIKTATSSNKFYTSQELNQLEKFKSDFRVGTKVRFILSLIIRVVKEEKVLIFCRNLAPMKLLVQLFEECFKWKKGREILLLYGEQDLFERGKVIDNFEDPCGVSKVLLASITACAEGISLTAASRLIFLDLEWNPSKIKQAIARAFCPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFREDFSENPSQWKTEKIKDDILREMVENDNPKAIHMIMKNEKASTN. 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03981 607 Pfam Helicase conserved C-terminal domain 410 523 IPR001650 -
Seca12g03981 607 CDD SF2_C_SNF 402 538 - -
Seca12g03981 607 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 606 IPR044567 GO:0080188
Seca12g03981 607 Gene3D - 330 607 IPR027417 -
Seca12g03981 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 259 IPR027417 -
Seca12g03981 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 577 IPR001650 -
Seca12g03981 607 SMART helicmild6 438 527 IPR001650 -
Seca12g03981 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 587 IPR027417 -
Seca12g03981 607 Gene3D - 4 289 IPR038718 -
Seca12g03981 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 251 IPR014001 -
Seca12g03981 607 Pfam SNF2-related domain 36 356 IPR000330 GO:0005524|GO:0140658
Seca12g03981 607 SMART ultradead3 23 263 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03981 Seca-Chr12 105798490 105800313 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03981 453 563 RAD5 or RAD16-like Gene Family AT5G05130 36.607 2.18e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca12g03981 SNF2_N 1.3e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03981 K10875 - gmx:100811703 871.692