Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03978 ATGGAAGAAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGCTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTATATACTTGGTACAAGGAAATCAGCAAGTGGGAGATTCCTATTCCAGTGTATCTGATTCGCGATCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTGGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCCAGGGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGAGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAATTCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCATGTGGTGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGAAAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTACAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCATTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAGGAACTAAACCGGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGATATTTATTTTGAGCCTTATCATTCATGTTGTCAAGCAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCTAG 1320 0.3932 MEEKSERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTTLYTWYKEISKWEIPIPVYLIRDRKNLRDFDETPLTIPGVPNPTGDVKHVLDCLEKIKKWHLHPRVLVMGYTSFLSLTRENSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLRKELMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKGNDKIPEKAKHLLETRARKFFLDDIANKIDSCGDEVRMQGLNMLRKITSGFIDVYESGNSEKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFHLEGELMVTLGSIHPWLIKTATSSNKFYTSQELNRLEKFKSDFRVGSKVIFILSLIIHVVKQEKVLIFCRNLAPMKLLVQLFEECFKWKKACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPG. 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03978 439 SMART ultradead3 3 213 IPR014001 -
Seca12g03978 439 Gene3D - 400 439 IPR027417 -
Seca12g03978 439 Gene3D - 1 239 IPR038718 -
Seca12g03978 439 CDD SF2_C_SNF 352 439 - -
Seca12g03978 439 Pfam SNF2-related domain 7 305 IPR000330 GO:0005524|GO:0140658
Seca12g03978 439 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 402 439 IPR044567 GO:0080188
Seca12g03978 439 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 2 201 IPR014001 -
Seca12g03978 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 203 IPR027417 -
Seca12g03978 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 439 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03978 Seca-Chr12 105780122 105781555 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca12g03978 SNF2_N 1.6e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03978 K10875 - gmx:100811703 618.231