Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03964 ATGTCTAGCAGAAGATCTCGTTCTAGACAATCCGGTGTTTCCACTGAGATCACTGATGCTCAGATTACCGAACTCGTTTCCAAGTTACAACAACTTATCCCTGAACTATCAAGGCGTTCCGACAAGGTTTCAGCGTCTAAGGTGTTGCAGGAGACTTGCAACTACATCAAAAGCTTGCACAGAGAGGTAGATGATCTAAGTGATCGATTATCAGCACTTTTGGCCACCACAGACCCCAACAGTGCTCAAGCAGCTATTATTAGGAGCTTACTTATGTAA 279 0.4409 MSSRRSRSRQSGVSTEITDAQITELVSKLQQLIPELSRRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSALLATTDPNSAQAAIIRSLLM. 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03964 92 CDD bHLH_AtPRE_like 17 76 - -
Seca12g03964 92 Gene3D - 4 88 IPR036638 GO:0046983
Seca12g03964 92 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Seca12g03964 92 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Seca12g03964 92 FunFam Transcription factor ILI6 7 88 - -
Seca12g03964 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 59 IPR011598 GO:0046983
Seca12g03964 92 Coils Coil 56 76 - -
Seca12g03964 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 83 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03964 Seca-Chr12 104758199 104759975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03964 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 68.085 9.89e-35 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g03964 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03964 - - gmx:100791371 151.754