Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03956 ATGCAAGACATGAAGAAGCAGAAGCAGCAGTGCAGTGAAGATTCTAAGAAGAAGGAGCGTCACATTGTCACTTGGACTCAAGAGGAGGATGATATACTTAGAGAGCAGATTGGTATTCATGGAACTGAGAATTGGGCAATTATTGCATCTAAATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCAGAGGAAGACATGCTGTTATGTGAGGCTCAAAAAATATTTGGGAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACACTATGCAGAAAGAGAGAAAAATATGCAGCTTTAGCAAAAGAGAATAGCATTTCATACATTAATTCAAATAACAAGAGGATTATTCCTCAACATGGTTGTAATACAGATGCAACACCAGAATCTGCAGTACCAGTTAAGAAGATGAGGAGGGCCCATATCCCTGATGATGGTAAAAATATAAGCATTGGAGACAGATCACATTTGCGAAATGGAACTCCAATAAATCAGCAGCCAAGAGCACCATTTGCTGTATTAGCTCAGAACTCCCCTAATGTAAACAACTTGCCAGACCAACAACGTGTTTGCGATTCCAAGTTTAATGGTTCCGCTCAAAATAACAAAATTCAAGGAACATTCCTCAAAAAGGATGACCCAAAGATAAGTGCATTGATGGAACAGGCAGAGTTACTAAGTTCACTAGCTCTAAAAGTTGATACAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGGGTTTCTGAACCGTACCAAAGAATCAGATATCCATAGACATAAGATTCCAGATTTACTGCTTGTAGATCTGAAAGATATGGTTGAGGACTTGAAGACTAGTAATGAGGGAGGTCGTTCCTGTTGGAGGAAACTGGAACTATATGAAGACTCTCCAGGCAGCTCTGAATACAGTACAGGATCAACTCTCCTGCCTCAGTCAGCTGGTGATAATTTGGAACACTCATTGCATCAGGATATTGGAGCTGAAATGAAGGCTACACAATTTGGAGATAAAAGAGAATTAAGTAATGATGAGAAAGGGGTTCTTTCTACTGCAAATGTGGATCAAGATATTTGTGAGGATCAGATAAACAATGATGGTGTTGTTTCTGCCTCATCAAGATTGGAGTTCAGTTCCCCTCTTCAAGCAACCCCTATTTTCAGATCCTTGGCTGCAGGAATTCCCAGCCCGCAATTTTCAGAAAGTGAAAGGAACTTCCTGAGGAAAACACTAGGAGTGGAGTCTCCATCCTTCAATCCAAGTGCCAACCCGTCCCAACCACCCCCCTGCAAAAGAGCCCTGCTACATAGTCTATGA 1413 0.4112 MQDMKKQKQQCSEDSKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKREKYAALAKENSISYINSNNKRIIPQHGCNTDATPESAVPVKKMRRAHIPDDGKNISIGDRSHLRNGTPINQQPRAPFAVLAQNSPNVNNLPDQQRVCDSKFNGSAQNNKIQGTFLKKDDPKISALMEQAELLSSLALKVDTENMDQSLENAWKVLQGFLNRTKESDIHRHKIPDLLLVDLKDMVEDLKTSNEGGRSCWRKLELYEDSPGSSEYSTGSTLLPQSAGDNLEHSLHQDIGAEMKATQFGDKRELSNDEKGVLSTANVDQDICEDQINNDGVVSASSRLEFSSPLQATPIFRSLAAGIPSPQFSESERNFLRKTLGVESPSFNPSANPSQPPPCKRALLHSL. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03956 470 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Seca12g03956 470 FunFam Transcription factor MYB124 17 73 - -
Seca12g03956 470 MobiDBLite consensus disorder prediction 1 20 - -
Seca12g03956 470 Pfam Myb-like DNA-binding domain 25 85 - -
Seca12g03956 470 CDD SANT 77 118 IPR001005 -
Seca12g03956 470 PANTHER MYB PROTEIN-RELATED 24 191 - -
Seca12g03956 470 SMART sant 21 70 IPR001005 -
Seca12g03956 470 SMART sant 73 121 IPR001005 -
Seca12g03956 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 123 IPR017930 -
Seca12g03956 470 CDD SANT 24 68 IPR001005 -
Seca12g03956 470 ProSiteProfiles Myb-like domain profile. 25 68 IPR001005 -
Seca12g03956 470 Gene3D - 76 144 - -
Seca12g03956 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 72 IPR017930 -
Seca12g03956 470 SUPERFAMILY Homeodomain-like 21 115 IPR009057 -
Seca12g03956 470 Gene3D - 13 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03956 Seca-Chr12 104360964 104367797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03956 12 321 MYB Transcription Factor Family AT2G02820 62.102 3.59e-137 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g03956 Myb_DNA-bind_6 8.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03956 K09422 - gmx:100807667 722.235