Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03952 ATGGGTAACTGCCTAGATTCTTCAGCAAAAGTAGATTCAGGTCACAGTTCCAGTCCCAGTCCCAGAACCCCTTCTGGAATTTCAAAAACTAGTACTTCATCTGTTCCTTCCAGTTTATCTATTCTGTCTCACAGTGGAAGAAGTGATGTCTCAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCTCCAAATCTTAAGGCCTTTCCATTCAATGAGCTAAAGAATGCCACCAGAAACTTTCGACCTGATAGTCTTCTTGGTGAAGGAGGATTTGGTTATGTTTACAAGGGATGGATTGATGAACACACGTTTACAGCTACAAAACCTGGATCAGGAATGGTTGTTGCTGTAAAAAAACTTAAGCCTGAAGGTTTACAAGGTCATAAGGAGTGGTTGACTGAAGTTGATTACCTTGGGCAACTTCACCATGAAAATCTGGTTAAATTGATTGGATACTGTGTGGAGGGAGAGAACAGGATGTTGGTCTATGAGTTTATGCCTAAAGGAAGCTTAGAGAATCATCTTTTTAGAATAACAGGAGGACCACAACCTCTGTCTTGGTCAGTGAGGATGAAAGTGGCCATTGGTGCAGCCAGAGGACTCTCTTTTCTTCATAACGCCAAATCACAAGTCATATACCGTGATTTTAAAGCATCAAATATCCTACTAGATGCAGATTTCAATGCTAAACTCTCTGATTTTGGCTTAGCAAAAGCTGGTCCTACGGGAGATAGAACTCATGTCTCTACTCAAGTCATGGGTACTCAGGGATATGCAGCACCTGAATATGTTGCAACAGGTCGTCTAACAGCCAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGCTTGAACTTCTATCTGGTAGACGTGCTGTTGATAGAACAAAAGCTGGTATTGAGCAAAATCTGGTAGACTGGGCAAAACCATATTTGGGTGACAAAAGAAAACTATTTAGGATTATGGACACAAAGTTGGAGGGCCAATACCCACAAAAAGGAGCCTACATGGCTGCAAATCTTGCTCTACAATGCCTTAATCGTGAATCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGCAACTCTAGAACAGATTGAAGTTTCCAAAAATGCAGGGCGATACTCCCAATCAGAACACAAGAGAGTCCATGTAAAAAAGTTTCCTGCACAAAATCGGTCCCCTTTAAATGTTACTCCAACTAAACTCCCATTGCCATCCCACCGACCATCTACTCTTGTACACTAA 1254 0.4203 MGNCLDSSAKVDSGHSSSPSPRTPSGISKTSTSSVPSSLSILSHSGRSDVSSLPTPRSEGEILSSPNLKAFPFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTATKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHENLVKLIGYCVEGENRMLVYEFMPKGSLENHLFRITGGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDADFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRTKAGIEQNLVDWAKPYLGDKRKLFRIMDTKLEGQYPQKGAYMAANLALQCLNRESKARPPMTEVLATLEQIEVSKNAGRYSQSEHKRVHVKKFPAQNRSPLNVTPTKLPLPSHRPSTLVH. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03952 417 Gene3D Phosphorylase Kinase; domain 1 59 168 - -
Seca12g03952 417 MobiDBLite consensus disorder prediction 374 417 - -
Seca12g03952 417 MobiDBLite consensus disorder prediction 9 62 - -
Seca12g03952 417 MobiDBLite consensus disorder prediction 394 417 - -
Seca12g03952 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Seca12g03952 417 SUPERFAMILY Protein kinase-like (PK-like) 55 365 IPR011009 -
Seca12g03952 417 ProSiteProfiles Protein kinase domain profile. 83 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03952 417 MobiDBLite consensus disorder prediction 1 64 - -
Seca12g03952 417 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Seca12g03952 417 Pfam Protein tyrosine and serine/threonine kinase 87 364 IPR001245 GO:0004672|GO:0006468
Seca12g03952 417 FunFam Serine/threonine-protein kinase BIK1 50 168 - -
Seca12g03952 417 PANTHER OS01G0588500 PROTEIN-RELATED 34 369 - -
Seca12g03952 417 FunFam Probable serine/threonine-protein kinase PBL8 169 385 - -
Seca12g03952 417 Gene3D Transferase(Phosphotransferase) domain 1 169 393 - -
Seca12g03952 417 CDD STKc_IRAK 89 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03952 Seca-Chr12 104296107 104299264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03952 61 365 Glycoside Hydrolase AT3G07070 52.941 7.36e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca12g03952 PK_Tyr_Ser-Thr 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03952 - - gmx:100809778 676.396