Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03943 ATGAAGAAATTTTTGGTTTCTTTCTGTTATTTGTTTCCTGCAATCATTCTTGTGCTGCTTACTCCTACTTCAATTGCACAGCTAACAACAAGTGAGAGTAGAATTCTTTTCCAAGTTCAGAAACTTCTTGAATATCCTCAAGCTCTTCAAGGATGGTCAAGGTGGACCAACTTTTGTTTCCTTCCTCCCTCACCTTCCCTCAAGATAGTTTGCTCAAATGGTCATGTGACAGAATTGACTATCATTGGAAACAAGACCTCCCCATCTTCACACAGCCCCAAAGCATCTTCTTGGAGTTCCCATGAAACCCTTTCAGGAAGCTTCTCTATTGATTCTTTCTTTACTGTCACAACAAAGCTTTCAAATTTGAAGGTGTTGTCATTGGTGTCCTTGGGTTTGTGGGGTCCTTTACCAGCCAAGATCAACCGGTTGTGGTCTCTTGAAGTGCTTAACATTAGCTCAAATTTCATTTATGGGGAAATCCCACAATCCATATCTTCTATGAAAAGTCTAAGGAGTCTGGTTTTGGCTGATAATCTCTTCAATGGAAGTGCCCCAGATCTCAAAAGTTTAGCTTCTCTTGAAGAGCTCAACTTGGGTGGTAACAAACTGGGTCCTGATTTCCCTTCAGTGGGAAAGAATCTTGTGAGTATTATCTTGAAAAAGAATTCTTTGAGATCACAGATTCCTCCACAGCTTGTGCACTTTGATAAACTTCAAACATTTGACATCTCTTCCAATAAATTTTTTGGAAGCATCCCATCCTCTCTGTTCTCTCTGCCTTCCCTTGAGTACCTAAACTTGTCTTCAAACAAACTAAGTGGTAACCTCTCAATGAACACAGCCTGTGGTTCTGCACTGAAATTTTTGGATATCTCAAGCAACCTTTTGGTAGGAAAATTACCATCCTGCATTGGTTCAATGTCTTCAAAAGCCACAGTACTATATTCTGGGAACTGTTTTTCAACCAGAAGGGTAAATGATCAACAACATCCAACTTCATATTGCAAGAGAGATGCTGCTTTAGCTGTTAAGCCTCCAGCTAAAAAGCTGAAGAAGGAATCAGATTCTGGTATGAAACTAGGCCTTGTACTTGGAATAATTGGAGGAGCTGTAGTAATTGCAGGACTTCTGGTTCTACTCATTGTGTTTATCTTAAGGAAGTCCAAAGCAGAAAGATCTGATTATATCATGAACAGATCTGCTGCTCATAAATTTTCAACCCATGCATCTCCAAAACCAAATATTAATGCAAGACGTGTTCCTCAGACAATGAAGGTAGCTACACTTGGACTGCCACCATACCGTATTTTCACATCAGAGGAAATTGAAGATGCAACAAACAACTTTGACTCATCAAATTTTATAGGAGAAGGATCACAGGGACAGCTATATAAAGGTTGGCTCAGAGATGGTTCAGTGGTCCTGGTTAACTGTGTAAAAATAAAGCAGAAGGGTTTGCCCCACAGCATTATGCAGAACTTAGAGGTATTACCCAATTTGAGGCATAGGCATATAGTAAGTGTTCTAGGACACTGTGTCATTACTCATCAAGAGTCTCCTCAAACAACAAGCACAGTCTTCATTGTATTTGAATACATCTCAAATGTGTCATTGAGGGATCAACTTACAGATGGGAGAAAGAGGGAAATGCTGAAATGGCCACAAAGAATGGCAATGAGCATAGGCATTGCAAGAGGAGTCCAGTTCTTACACACAGGAATTGCTCCTGGCATATTTGGCAACAATTTAAAGATTGAAAACATTCTGTTGGATGATAGTCTCAATGCAAGAGTCAGTGCATACAGCATTCCATTGCCATCCAAGGTTAGCACAGCCTATATAATTTGA 1851 0.3992 MKKFLVSFCYLFPAIILVLLTPTSIAQLTTSESRILFQVQKLLEYPQALQGWSRWTNFCFLPPSPSLKIVCSNGHVTELTIIGNKTSPSSHSPKASSWSSHETLSGSFSIDSFFTVTTKLSNLKVLSLVSLGLWGPLPAKINRLWSLEVLNISSNFIYGEIPQSISSMKSLRSLVLADNLFNGSAPDLKSLASLEELNLGGNKLGPDFPSVGKNLVSIILKKNSLRSQIPPQLVHFDKLQTFDISSNKFFGSIPSSLFSLPSLEYLNLSSNKLSGNLSMNTACGSALKFLDISSNLLVGKLPSCIGSMSSKATVLYSGNCFSTRRVNDQQHPTSYCKRDAALAVKPPAKKLKKESDSGMKLGLVLGIIGGAVVIAGLLVLLIVFILRKSKAERSDYIMNRSAAHKFSTHASPKPNINARRVPQTMKVATLGLPPYRIFTSEEIEDATNNFDSSNFIGEGSQGQLYKGWLRDGSVVLVNCVKIKQKGLPHSIMQNLEVLPNLRHRHIVSVLGHCVITHQESPQTTSTVFIVFEYISNVSLRDQLTDGRKREMLKWPQRMAMSIGIARGVQFLHTGIAPGIFGNNLKIENILLDDSLNARVSAYSIPLPSKVSTAYII. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03943 616 ProSiteProfiles Protein kinase domain profile. 450 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03943 616 Gene3D Phosphorylase Kinase; domain 1 415 533 - -
Seca12g03943 616 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 29 213 - -
Seca12g03943 616 Pfam Leucine rich repeat 146 204 IPR001611 GO:0005515
Seca12g03943 616 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515
Seca12g03943 616 Pfam Protein tyrosine and serine/threonine kinase 454 602 IPR001245 GO:0004672|GO:0006468
Seca12g03943 616 Gene3D Ribonuclease Inhibitor 215 337 IPR032675 -
Seca12g03943 616 SUPERFAMILY L domain-like 73 322 - -
Seca12g03943 616 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 423 523 - -
Seca12g03943 616 SUPERFAMILY Protein kinase-like (PK-like) 429 600 IPR011009 -
Seca12g03943 616 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 99 600 - -
Seca12g03943 616 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 215 341 - -
Seca12g03943 616 Gene3D Ribonuclease Inhibitor 29 214 IPR032675 -
Seca12g03943 616 Gene3D Transferase(Phosphotransferase) domain 1 534 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03943 Seca-Chr12 104000480 104003555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03943 24 610 Miscellaneous Gene Families AT2G02780 50.165 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Seca12g03943 PK_Tyr_Ser-Thr 8.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03943 - - gmx:100789785 894.419