Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03942 ATGATATCTGCCTTGTTCAATTTTCAGAGCTCACCTAATGAGCAAAATGCCACCATTCATATTGGCAGCACAAATAAAGAAGAAAAAGAAGATGTCTATCAGCTGGGTGTTATTCTACTTGAAGTTATCACTGGCAAACAAATAGCTTCCTCCAGTGAAATAGAGCAGCTCAAGGAAGAGCTGGAGACAGGTTCCTCAGAAGCAGCATCAATACTAAGAAGTGCAATTGATCCTTCTCTGAGGGGAAGTTATGCATATGAATCAATGAGGACTGCAGTTAGAATTACCATCAATTGTCTATCCAAGGTTTCTAGTAAACGCCCTTCAATAGAGGATGTTCTCTGGAATTTACAGTACTCAATGCAAGTTCAAGAGTCATGGACCAGCAGTGGAAACCTCAGCACAAAATTGTAA 414 0.401 MISALFNFQSSPNEQNATIHIGSTNKEEKEDVYQLGVILLEVITGKQIASSSEIEQLKEELETGSSEAASILRSAIDPSLRGSYAYESMRTAVRITINCLSKVSSKRPSIEDVLWNLQYSMQVQESWTSSGNLSTKL. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03942 137 Gene3D Transferase(Phosphotransferase) domain 1 13 133 - -
Seca12g03942 137 PANTHER OS07G0166700 PROTEIN 25 124 IPR045272 GO:0004714|GO:0006468
Seca12g03942 137 SUPERFAMILY Protein kinase-like (PK-like) 27 115 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03942 Seca-Chr12 103999549 104000429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03942 23 137 Miscellaneous Gene Families AT3G03770 42.609 1.60e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Seca12g03942 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03942 - - gmx:100803061 216.853