Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03940 ATGCAGGATCAAAACCTTGAATCAGCTAAGGGGAAAATGGGTGACACTAGAGAAGAAAACGAGAGGTTGAATGTAAAGGATCATCAAGTGTTGCAAATGGACTTCTTTAACATCCTTCAACAAGAAGATCAGGCAACCATAGTTACAGGTACAAGTGAAGAGAATGAAGAAAGTGAACTTGTATCCCTTTCTCTAGGGATTTCATCCAAAGTCCAACCTATCATGGATGAGAAAAAGAGTAGCAATAGAACTAAAAAGGCCAGAGAAGATGGACTTGCACTTGGGTTGGATATCAAATTTGACCCTCCAGCTCAAGCTGAAACTACAAAACATTCCCACCCTGAAAATGGCTTTGATGAGGAACTTGTTAAGATATGGCCACCTAGTAAAGTTCCTAAGACAACAAGAAATGAGGATAAATGTGAAGCTTCTCAACATACTCAGCTCAAGAAAGCTAGGGTTTGTATCAGAGCCAGATGTGACACACAAACGATGAATGATGGGTGCCAATGGAGAAAATATGGGCAGAAAATGGCAAAAGGAAATCCGTGTCCCCGAGCATACTATCGATGCAGTGTCTCTCCATCTTGTCCTGTGAGAAAACAGGTTCAAAGATGTGCTGATGACATTTCAATCTTGATTACAACTTATGAAGGAACCCACAACCATCCGTTGCCTACTTCAGCGACTGCCATAGCCTACACAACTTCAGCAGCTGCTTCCATGCTTCAATCTCCCTCATTGACCTCACAACAAGGACTAGTATCCAATTACAACCTTAATGCCCCAAACTTCACATCAACTTGTAGCCAGCAGTTTTCAACTCCACAACAATTACACTTCCACAGTTCAACCTCCAATTCTCACCCCACAGTCACTTTTGATCTCACTAGTACTACACCTCATATTGGAAAATTCACCCCAGCCATACCAAAATATTCATCAACAAACCTTAACTTTTCCTCAACCATCACCACCCCTTTACAATCTAGTATGCTACACTCATCATCATCATCATCAGCTTGGAGCCCTTATAGTGAGTACTTCAACTACTATGGGGGACTCATCACCCAAAATAGAAACCAATATGGTTCACTTATGAACAATGGAAAACAGCCATTTCAAGGACATAATTACTACATGAGCAACAACCATGGAATTTCTCAACAACCAGATTCCATTGCAGCCACAACCAAGGCTATCACAGCCAACCCAAAATTTCAATCTGCACTAGCAACTGCTCTCACAACTTATGTTACTAATAATGGATCTGCTTGTGGTGGGGTAAGAGAAAATCATCATGTTGTGGACCAGAATGCAGATTTGAACTTGAAGCTAGGTGGAGATCATATGCCATACACAAACAACACAGTTTACACTTCTACTTCTAACCAGAATAATGGCATAGCATCATGTGCATCATCAAGGTACCTGAGTATTTCACCCTCTGCTCCTAATGCTCAGAAAGGAAACATGGTTATATTTCCACCACCACAAGCGTCTAAAAGTTCCTTTGGGTCGCTTTCTAATAAAAGTAACCAGTTCCTAGAGGAAGGGAAGTGA 1563 0.4127 MQDQNLESAKGKMGDTREENERLNVKDHQVLQMDFFNILQQEDQATIVTGTSEENEESELVSLSLGISSKVQPIMDEKKSSNRTKKAREDGLALGLDIKFDPPAQAETTKHSHPENGFDEELVKIWPPSKVPKTTRNEDKCEASQHTQLKKARVCIRARCDTQTMNDGCQWRKYGQKMAKGNPCPRAYYRCSVSPSCPVRKQVQRCADDISILITTYEGTHNHPLPTSATAIAYTTSAAASMLQSPSLTSQQGLVSNYNLNAPNFTSTCSQQFSTPQQLHFHSSTSNSHPTVTFDLTSTTPHIGKFTPAIPKYSSTNLNFSSTITTPLQSSMLHSSSSSSAWSPYSEYFNYYGGLITQNRNQYGSLMNNGKQPFQGHNYYMSNNHGISQQPDSIAATTKAITANPKFQSALATALTTYVTNNGSACGGVRENHHVVDQNADLNLKLGGDHMPYTNNTVYTSTSNQNNGIASCASSRYLSISPSAPNAQKGNMVIFPPPQASKSSFGSLSNKSNQFLEEGK. 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03940 520 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 427 IPR044810 GO:0003700
Seca12g03940 520 Pfam WRKY DNA -binding domain 166 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g03940 520 MobiDBLite consensus disorder prediction 497 520 - -
Seca12g03940 520 ProSiteProfiles WRKY domain profile. 160 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g03940 520 SMART WRKY_cls 165 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g03940 520 SUPERFAMILY WRKY DNA-binding domain 158 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g03940 520 MobiDBLite consensus disorder prediction 1 23 - -
Seca12g03940 520 FunFam probable WRKY transcription factor 31 150 227 - -
Seca12g03940 520 Gene3D WRKY domain 149 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g03940 520 Coils Coil 6 26 - -
Seca12g03940 520 MobiDBLite consensus disorder prediction 496 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03940 Seca-Chr12 103904329 103906561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03940 13 479 WRKY Transcription Factor Family AT5G15130 36.047 4.52e-65 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g03940 WRKY 6.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03940 - - gmx:102666229 494.582