Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03939 ATGTTGCATTTGCAGTTGCAGCTACACTCACCACCAGCTTCATCTTCTTCTTATTCTTCCCTTAAGCTTTGCCCAAACCACTCTTTCTCTCCAAAGTTTTTTCCTTTCAACCCTTCTCCTAAACCCCTCACCCTCACTCAACCAATTAGGTGCCGCCACTCAGAGCTCTTCGACAACAAAACCTTCGCCTCCACACCACAACCCGCAAGCCCCAATCCTTCAGTTGGAGGTTTGCCACCTAGGGTTTATGTTGGTCACTCCATTTACAAAGGGAAGGCTGCGCTCACAGTCACTCCTAGACCACCGGAATTCACGCCACTGGAATCAGGGGCATTCAAGATATCTAGGGAAGGTTATGTGCTGCTTCAGTTTGCGCCAGCTGTTGGTTCACGCCAATATGATTGGAACAGAAAGCAGGTGTTCTCATTATCAGTGAATGAAATGGGAAGTGTGATGAGCCTTGGTGCAAGGGAGTCTTGTGAATTTTTTCATGATCCTTTGAAGGGCAAAAGTGATGAAGGTAAAGTTAGAAAAGTTTTGAAGGTGGAGCCTCTTCCAGATGGTTCTGGTCACTTCTTTAACCTCAGTGTTCAAAACAAGATTGTGAACATGGATGAAAGCATCTACATCCCTATTACAAAATCCGAGTTAGCAGTTCTGAACTCACTTTTCAATGTATAA 681 0.4493 MLHLQLQLHSPPASSSSYSSLKLCPNHSFSPKFFPFNPSPKPLTLTQPIRCRHSELFDNKTFASTPQPASPNPSVGGLPPRVYVGHSIYKGKAALTVTPRPPEFTPLESGAFKISREGYVLLQFAPAVGSRQYDWNRKQVFSLSVNEMGSVMSLGARESCEFFHDPLKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKIVNMDESIYIPITKSELAVLNSLFNV. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03939 226 Gene3D Transcriptional Coactivator Pc4; Chain A 74 226 IPR009044 GO:0003677|GO:0006355
Seca12g03939 226 SUPERFAMILY ssDNA-binding transcriptional regulator domain 80 225 IPR009044 GO:0003677|GO:0006355
Seca12g03939 226 Pfam Whirly transcription factor 88 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Seca12g03939 226 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 59 225 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03939 Seca-Chr12 103867996 103872837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03939 34 225 Whirly Transcription Factor Family AT1G14410 66.667 1.88e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Seca12g03939 Whirly 2.8e-61 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03939 K26559 - gmx:100804480 333.183