Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g03936 | ATGCAGAAAGCCAAGGGAACTGTTGCAGCAAGAGAGCATACTTCCAAAACTATGAAAGCTTTCTTTAGTGATCCAATAAACCGTGTGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAGACACTACTGTCCAGAACTCAAGGATAGTTTGATTGATCGGCAATTCACATGTAGTGTATGTGGGGAAAAAGGCCACAACAAAAGAACATGTAGAAAGTTAAGGATAAGCCATAGCAATGGGAGAGTTGTAAAACACCATCGGTGTAAAATATGTCGCCAATATGGCCATAACCGCAGGACATGCCCTCAAGTTGTTTCTAATAAAAGAAGGGTCATGGCCTCTCGAAGAGCATACAAGTGTCAGTTGTGCCAGAAAGAGGGACACAATATTAAGACATGTCCTAGTAGAAGAGTTGTTACTGAACATCCTCAAGAGTAA | 474 | 0.4241 | MQKAKGTVAAREHTSKTMKAFFSDPINRVKRSMAMKGVKFYCQNCGREGHRRHYCPELKDSLIDRQFTCSVCGEKGHNKRTCRKLRISHSNGRVVKHHRCKICRQYGHNRRTCPQVVSNKRRVMASRRAYKCQLCQKEGHNIKTCPSRRVVTEHPQE. | 158 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g03936 | 157 | SUPERFAMILY | Retrovirus zinc finger-like domains | 39 | 85 | IPR036875 | GO:0003676|GO:0008270 | |
Seca12g03936 | 157 | ProSiteProfiles | Zinc finger CCHC-type profile. | 42 | 57 | IPR001878 | GO:0003676|GO:0008270 | |
Seca12g03936 | 157 | Pfam | Zinc knuckle | 130 | 146 | IPR025829 | - | |
Seca12g03936 | 157 | SUPERFAMILY | Retrovirus zinc finger-like domains | 92 | 149 | IPR036875 | GO:0003676|GO:0008270 | |
Seca12g03936 | 157 | PANTHER | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN | 4 | 83 | - | - | |
Seca12g03936 | 157 | Gene3D | - | 31 | 86 | - | - | |
Seca12g03936 | 157 | Gene3D | - | 93 | 156 | - | - | |
Seca12g03936 | 157 | ProSiteProfiles | Zinc finger CCHC-type profile. | 69 | 84 | IPR001878 | GO:0003676|GO:0008270 | |
Seca12g03936 | 157 | SMART | c2hcfinal6 | 68 | 84 | IPR001878 | GO:0003676|GO:0008270 | |
Seca12g03936 | 157 | SMART | c2hcfinal6 | 131 | 147 | IPR001878 | GO:0003676|GO:0008270 | |
Seca12g03936 | 157 | SMART | c2hcfinal6 | 99 | 115 | IPR001878 | GO:0003676|GO:0008270 | |
Seca12g03936 | 157 | SMART | c2hcfinal6 | 41 | 57 | IPR001878 | GO:0003676|GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g03936 | Seca-Chr12 | 103810634 | 103811260 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g03936 | 1 | 150 | C2H2 Transcription Factor Family | AT5G20220 | 51.899 | 4.48e-50 | 163 |