Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03936 ATGCAGAAAGCCAAGGGAACTGTTGCAGCAAGAGAGCATACTTCCAAAACTATGAAAGCTTTCTTTAGTGATCCAATAAACCGTGTGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAGACACTACTGTCCAGAACTCAAGGATAGTTTGATTGATCGGCAATTCACATGTAGTGTATGTGGGGAAAAAGGCCACAACAAAAGAACATGTAGAAAGTTAAGGATAAGCCATAGCAATGGGAGAGTTGTAAAACACCATCGGTGTAAAATATGTCGCCAATATGGCCATAACCGCAGGACATGCCCTCAAGTTGTTTCTAATAAAAGAAGGGTCATGGCCTCTCGAAGAGCATACAAGTGTCAGTTGTGCCAGAAAGAGGGACACAATATTAAGACATGTCCTAGTAGAAGAGTTGTTACTGAACATCCTCAAGAGTAA 474 0.4241 MQKAKGTVAAREHTSKTMKAFFSDPINRVKRSMAMKGVKFYCQNCGREGHRRHYCPELKDSLIDRQFTCSVCGEKGHNKRTCRKLRISHSNGRVVKHHRCKICRQYGHNRRTCPQVVSNKRRVMASRRAYKCQLCQKEGHNIKTCPSRRVVTEHPQE. 158
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03936 157 SUPERFAMILY Retrovirus zinc finger-like domains 39 85 IPR036875 GO:0003676|GO:0008270
Seca12g03936 157 ProSiteProfiles Zinc finger CCHC-type profile. 42 57 IPR001878 GO:0003676|GO:0008270
Seca12g03936 157 Pfam Zinc knuckle 130 146 IPR025829 -
Seca12g03936 157 SUPERFAMILY Retrovirus zinc finger-like domains 92 149 IPR036875 GO:0003676|GO:0008270
Seca12g03936 157 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 4 83 - -
Seca12g03936 157 Gene3D - 31 86 - -
Seca12g03936 157 Gene3D - 93 156 - -
Seca12g03936 157 ProSiteProfiles Zinc finger CCHC-type profile. 69 84 IPR001878 GO:0003676|GO:0008270
Seca12g03936 157 SMART c2hcfinal6 68 84 IPR001878 GO:0003676|GO:0008270
Seca12g03936 157 SMART c2hcfinal6 131 147 IPR001878 GO:0003676|GO:0008270
Seca12g03936 157 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Seca12g03936 157 SMART c2hcfinal6 41 57 IPR001878 GO:0003676|GO:0008270
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca12g03936 Seca-Chr12 103810634 103811260 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03936 1 150 C2H2 Transcription Factor Family AT5G20220 51.899 4.48e-50 163