Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03926 ATGGAGCTTTCCCCTGCTGTGAAATCTGAACTAAGCCCAAGAAGTCATAGGTTGCTCATGATAGATAGTGAGGCTATTCCTACTAAATGTGTTAAAAGGAGGCGAAGAGATTCATCATCTATGGCAGTTTTAGGGGCTAATGAAAAACAAGGTGAACAGTCAGAAGAACAGCAGCCACTTGGTGGCCAATCAACTGCCACCACTGTGAAGAGAAGCTCAAGGCATAGGTGGACTGGAAGGTTTGAAGCCCATCTATGGGATAAAGGGACCTGGAATCCAACTCAAAAGAAGAAAGGAAAGCAAGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACAAATTTCCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGAAAACTGTGACCAAAGAAGAATATCTTGCTTCATTAAGAAGGAGGAGCAGTGGTTTCTCCAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCATCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTTGGCAACAAGTACCTCTATCTTGGGACTTACAGCACACAAGAAGAGGCAGCTCGTGCATATGATATTGCAGCAATTGAATACAGAGGCATAAATGCAGTCACAAACTTTGACTTGAGCACCTACATCAGATGGCTAAGACCAGGAGCACATTCTAATGCTTCTCAAGGGAAAAAGACAAGCACAGACCCTCAACACTTTGCAACCTCTAACTCCATCCAAATAAGAGGAAACACTGAGGTATCCAACTCCAACATCCCTCAATTCCATGCAGGTGAATTGGGCAGTACCAAGAAGCAAGACTTTTCCTTTATGACCCCTTTAAGTCCTTGCAATAAGTCATCTTCCCCAACAGCATTAGGACTTCTCCTGAAATCCTCAGTGTTTAGAGAACTGATGCAGAGAAATCTGAACTCTTCTAATGAAGAAGCTGAAGAAGTTGAATTGAAATATCCACAAGACTGCAGTGATGGGATTGGAGGAATTTTTGATAATGGTAACACCAGTAACCCTTACTTGTGCTCTTCCAATATTAATAGATTACCCAACTTGGAGTCATCAGAAGAAAGCCAATTGCCAATGTATCATGGAACTATGCAATCCCTATGGAATGGTGCTTTCAACATGTCTAACTGA 1197 0.4202 MELSPAVKSELSPRSHRLLMIDSEAIPTKCVKRRRRDSSSMAVLGANEKQGEQSEEQQPLGGQSTATTVKRSSRHRWTGRFEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGAHSNASQGKKTSTDPQHFATSNSIQIRGNTEVSNSNIPQFHAGELGSTKKQDFSFMTPLSPCNKSSSPTALGLLLKSSVFRELMQRNLNSSNEEAEEVELKYPQDCSDGIGGIFDNGNTSNPYLCSSNINRLPNLESSEESQLPMYHGTMQSLWNGAFNMSN. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03926 398 ProSiteProfiles AP2/ERF domain profile. 68 131 IPR001471 GO:0003700|GO:0006355
Seca12g03926 398 FunFam AP2-like ethylene-responsive transcription factor 166 227 - -
Seca12g03926 398 Pfam AP2 domain 166 217 IPR001471 GO:0003700|GO:0006355
Seca12g03926 398 MobiDBLite consensus disorder prediction 30 74 - -
Seca12g03926 398 Gene3D AP2/ERF domain 166 227 IPR036955 GO:0003700|GO:0006355
Seca12g03926 398 Gene3D AP2/ERF domain 69 133 IPR036955 GO:0003700|GO:0006355
Seca12g03926 398 MobiDBLite consensus disorder prediction 43 72 - -
Seca12g03926 398 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700|GO:0006355
Seca12g03926 398 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Seca12g03926 398 SMART rav1_2 167 231 IPR001471 GO:0003700|GO:0006355
Seca12g03926 398 CDD AP2 166 227 IPR001471 GO:0003700|GO:0006355
Seca12g03926 398 SUPERFAMILY DNA-binding domain 73 133 IPR016177 GO:0003677
Seca12g03926 398 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 49 293 - -
Seca12g03926 398 Coils Coil 317 337 - -
Seca12g03926 398 SUPERFAMILY DNA-binding domain 166 227 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03926 Seca-Chr12 103681056 103683582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03926 67 229 AP2-EREBP Transcription Factor Family AT5G57390 67.066 2.68e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g03926 AP2 8.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03926 - - gmx:100799621 660.218