Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03925 ATGGCGAAACTAGACATTTTCTTTATTTTGCTTTGTTTGGCAATCCTCACTCCTACCATGCATGCCAATTTCTTAGAGAAGGATGAGTATTGGGAGGAACATACCACGGAATTTGATTCATATTGGCAAGGAAGGGCAAAAATTGCTAAACAAGACAATCAGGCAGCTTATTTTCCTAATCCATATGAAGTCTCTGGCAACATGACCGCTACTGTTAGCGAGCTCATCATTGGGAAAGATGCACGAAGGAACTTAAGGGGACAAAAAGGAGAAGGTCAATGCATGGCCACCAACCCCATTGATAGGTGTTGGAGGTGTGACCCCAATTGGGCTAACAACCGTCAGAAACTTGCAGATTGTGTACAGGGATTTGGTAGAAACACTATTGGTGGAAAAGGTGGGCCATTTTATGTGGTGAATGATACTTCAGATGATGAAATGGTGAATCCCAAACCAGGTACACTTCGCCATGCAGTTACACGAAATGGGCCCTTATGGATCATCTTTTCTCGTAGCATGGTCATTACACTTAAACAAGAGCTCATAATGGCTAGTAACAAGACCATTGATGGCAGAGGAGTGGATATTTTCATTGCTAATGGTGCTGGTATTACCGTACAGTTTGTTAAGAATATCATCATCCATGGAATTAAAATTTACAACATTCAAGTTCGTGATGGTGGAATGATTAGAGATTCTGAGGATCATTATGGTTTAAGGACAAGGAGTGATGGTGATGGAATTTCCATTTTTGGTGCTAGCAATGTTTGGATTGACCATGTTTCTATGAGAAATTGCACAGATGGACTCATCGATGCCATCATGGGATCCACTGCTATTACTATCTCTAATAGCCATTTCACAGACCACAATGAGGTGATGCTGTTTGGTGCTAGTGATGCCTATTCTGATGATAAGATAATGCAAATCACTGTGGCATTCAACCATTTTGGCAAGAGATTGGTCCAAAGAATGCCAAGGTGCAGATGGGGTTTTATCCATGTGGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGAATCCTACCATTATTAGTGAGGGTAACCGATTTATAGGTCCTGACAACATTTTTGCTAAAGAGGTGACAAAAAGAGAATACTCACCACAAAATGTGTGGTCAAGTTGGCAATGGAGATCTATTAACGATGAGTTTTCGAATGGAGCATTTTTTGTACAATCTGGGGTTGAGCTAACTAACAGACCATTCTCAAGGAAGGACATGATCACAGCTAAGCCCGGGACGTATGTTGGAAGGCTTACACGCTATGCTGGCAACCTTGTCTGTCGTGTCGGTAAGCCTTGCTAG 1344 0.4174 MAKLDIFFILLCLAILTPTMHANFLEKDEYWEEHTTEFDSYWQGRAKIAKQDNQAAYFPNPYEVSGNMTATVSELIIGKDARRNLRGQKGEGQCMATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTIGGKGGPFYVVNDTSDDEMVNPKPGTLRHAVTRNGPLWIIFSRSMVITLKQELIMASNKTIDGRGVDIFIANGAGITVQFVKNIIIHGIKIYNIQVRDGGMIRDSEDHYGLRTRSDGDGISIFGASNVWIDHVSMRNCTDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDAYSDDKIMQITVAFNHFGKRLVQRMPRCRWGFIHVVNNDYTHWEMYAIGGSKNPTIISEGNRFIGPDNIFAKEVTKREYSPQNVWSSWQWRSINDEFSNGAFFVQSGVELTNRPFSRKDMITAKPGTYVGRLTRYAGNLVCRVGKPC. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03925 447 Pfam Pectate lyase 179 363 IPR002022 -
Seca12g03925 447 Gene3D - 97 440 IPR012334 -
Seca12g03925 447 SMART amb_all 172 369 IPR002022 -
Seca12g03925 447 PANTHER PECTATE LYASE 18-RELATED 51 445 IPR045032 GO:0030570
Seca12g03925 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Seca12g03925 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Seca12g03925 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Seca12g03925 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Seca12g03925 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Seca12g03925 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Seca12g03925 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Seca12g03925 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Seca12g03925 447 Pfam Pectate lyase, N terminus 35 85 IPR007524 GO:0030570
Seca12g03925 447 SUPERFAMILY Pectin lyase-like 98 437 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03925 Seca-Chr12 103652394 103655299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03925 8 447 Polysaccharide Lyase AT1G14420 57.895 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03925 K01728 - gmx:100798579 755.747