Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03918 ATGGAAGGCAATAAGAGCTCGGAGCAGAGCAACAATCCAGATGACTTGTGGTCGCCGATTAAGGACACGGACCCGTCGCCGGTGAACAAGTTGGTAGGTAGCAATGAAGGGAACATGGACACGGCGCCGGTGAACAAATTGGTAGGTAGCAATGAAGTGAACATGGACACGGCGCCGGTGAACAAGTTGGTAGGTAACAATGAAGGGGACATGGACACGGGGACGACGGAGGCGAAGCAGCCGCCGAGGAAGAAGCCAGGGGACATGGCCACGGGGACGGCGGAGCCGGAGCAGCCGCCGAGGAGGAAGCCAGGGAGGCCCAGGAAGTACCCAGAGGAAGGTTCCGCCTCTAGGAAAGCTACTGTTACTCATCATAGTAAGGAAAAGAGAGATGCAGGTAACGAAAAGAGAGACTTCGTTCCATATATTCTTACTGTTGGAGATGGTGAGGATGTTCTCCAAAAAATTATGTCGTTCGTTAAAGGAACAAGGCGTCAGGTTAGCGTTATGTCAGCATCTGGCTCCGTCTCTTGTGCCACTCTTGGTAAGCCAGCACCAGGACCTTCAGGAAGCATCAATGTTGCATATGAGGGTCTGTATTACATTACTTCGCTTACTGGTTGCTATGTCAGTCAAGACCGTGGAAGTCGGCGCACTGGTAGGTTCACTGCAACCTTATCTAATTCTGATGGGCAAAGCATTGGTGGAACCCTTGCTGGACCCCTTAAAGCTGCTGGTCTAGTTTTGGTCGTTGCTGGTACATTTAAGAAGCCCAAGTATGTCGAAATAAAAGGTGAAGCTTCTACACAACCAGTTGCAGCAGTTGCTAAACCAGAAACAAGTTTAGCTTTGCGCCCACAAGTTGGCTCTTCCAGTGGGAATCCAGTGCTGGAAATTGATTTAGAGACACCTTCCCCTCCCTTGGGCAGGGGAAGTGCTGGCTTTGAACTGACAGGAATAACAGATCGTGGAAAACAACAGGCTCTTCAGGAGGAGGACCCTGAAGAGACCCCTGATCAAAGTTCTGATTGA 1032 0.5068 MEGNKSSEQSNNPDDLWSPIKDTDPSPVNKLVGSNEGNMDTAPVNKLVGSNEVNMDTAPVNKLVGNNEGDMDTGTTEAKQPPRKKPGDMATGTAEPEQPPRRKPGRPRKYPEEGSASRKATVTHHSKEKRDAGNEKRDFVPYILTVGDGEDVLQKIMSFVKGTRRQVSVMSASGSVSCATLGKPAPGPSGSINVAYEGLYYITSLTGCYVSQDRGSRRTGRFTATLSNSDGQSIGGTLAGPLKAAGLVLVVAGTFKKPKYVEIKGEASTQPVAAVAKPETSLALRPQVGSSSGNPVLEIDLETPSPPLGRGSAGFELTGITDRGKQQALQEEDPEETPDQSSD. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03918 343 ProSiteProfiles PPC domain profile profile. 136 276 IPR005175 -
Seca12g03918 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 78 280 IPR039605 GO:0003680
Seca12g03918 343 MobiDBLite consensus disorder prediction 1 17 - -
Seca12g03918 343 MobiDBLite consensus disorder prediction 1 134 - -
Seca12g03918 343 MobiDBLite consensus disorder prediction 28 61 - -
Seca12g03918 343 MobiDBLite consensus disorder prediction 284 298 - -
Seca12g03918 343 MobiDBLite consensus disorder prediction 99 134 - -
Seca12g03918 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 139 263 - -
Seca12g03918 343 CDD DUF296 141 252 IPR005175 -
Seca12g03918 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 256 IPR005175 -
Seca12g03918 343 Gene3D - 141 272 - -
Seca12g03918 343 MobiDBLite consensus disorder prediction 284 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03918 Seca-Chr12 103404736 103407360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03918 96 256 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 38.624 1.32e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03918 - - gmx:100816781 154.451