Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03903 ATGGCTGGTGGAAAGCTTTATGGGGATTCAAGCATGACACTTTTACTCCAAAATGAAAGGCTTCCATGCCCCTCTGAGTTTGTTGAGTCTCTCTGGGTCCACAGTCACCACTCTGAACCTTCTTTACAAGGTTCAAAATCACTGGTTAATGTTATGAATGTTAGTGGCAGTGGGGTCACAGATAGGCCCTTGTTCCAAGCGCTTGAGAAAGAAGAGAACGGTGATGATGAAGATTATGAAGTGTGCTTCCAAAAACCCGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGTAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTCCAACTTGCAAAGGAACTTGGCTTGCAGCCAAGGCAAGTGGCCATATGGTTCCAAAACCGAAGGGCAAGGTTCAAAACCAAACAGCTAGAAAAAGACTATGACACTTTGAAAACTAGCTATGACATGCTCAAAGGTGACCATGACAATCTCCTTCAAGAGAATGAGAAGTTAAGAGAAGAGGTTAATTCTCTGAAGAAGAGATTGATTCCTAGAGAGAAAGAGAAACAGAATTTAGATGACAAGCCATGTGATGCTGTCAATTCCCAACATAAAGAGCACATGGATTTAATCATAAATGGAGCTCCTGAAAATGGGTCCAAAGTGCCACTTCCTGTTATGGTCATCTACAAACAGGAAGATGCTAATTCAGCTAAAAGTGATGTGGTTGATTCAGAGAGCCCACATTACACTGATGGAAACCAATCCTCATTTGTGGAACCTGCAGATTCATCTCATGGTTTGGAATTAGATCAGTCAGATTTCTCACAAGATGAAGAAGACATCCTAAGCCAAAACTTCTTGACAGTGCCATTCCTACCAAAGGTTGAAGATGGCTGCTATGGAGTTGAAGATCAAACCTTCTGTTTTTGGTCTTACTGA 948 0.4177 MAGGKLYGDSSMTLLLQNERLPCPSEFVESLWVHSHHSEPSLQGSKSLVNVMNVSGSGVTDRPLFQALEKEENGDDEDYEVCFQKPGKKRRLTSEQVQFLESNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYDTLKTSYDMLKGDHDNLLQENEKLREEVNSLKKRLIPREKEKQNLDDKPCDAVNSQHKEHMDLIINGAPENGSKVPLPVMVIYKQEDANSAKSDVVDSESPHYTDGNQSSFVEPADSSHGLELDQSDFSQDEEDILSQNFLTVPFLPKVEDGCYGVEDQTFCFWSY. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03903 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 73 233 IPR045224 GO:0003700
Seca12g03903 315 Pfam Homeobox associated leucine zipper 143 184 IPR003106 GO:0006355|GO:0043565
Seca12g03903 315 Pfam Homeodomain 88 141 IPR001356 GO:0003677
Seca12g03903 315 Coils Coil 156 183 - -
Seca12g03903 315 Gene3D - 82 150 - -
Seca12g03903 315 PRINTS Lambda-repressor HTH signature 114 123 IPR000047 GO:0003677
Seca12g03903 315 PRINTS Lambda-repressor HTH signature 123 139 IPR000047 GO:0003677
Seca12g03903 315 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Seca12g03903 315 CDD homeodomain 86 144 IPR001356 GO:0003677
Seca12g03903 315 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Seca12g03903 315 SUPERFAMILY Homeodomain-like 78 145 IPR009057 -
Seca12g03903 315 MobiDBLite consensus disorder prediction 239 272 - -
Seca12g03903 315 FunFam homeobox-leucine zipper protein ATHB-6-like 91 137 - -
Seca12g03903 315 SMART HOX_1 85 147 IPR001356 GO:0003677
Seca12g03903 315 MobiDBLite consensus disorder prediction 243 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03903 Seca-Chr12 102032173 102034249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03903 44 260 Homeobox Transcription Factor Family AT3G01470 43.891 6.11e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca12g03903 Homeodomain 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03903 K09338 - gmx:100804328 449.129