Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03899 ATGCCATTTGGTTTGGTCTCAGCCTGGAACAAGTGCAGAAGAAGCAAGTCTCAAGATCATTCAGACCCTTGGATTTATAAACCTGCTGAGTTTTGGCAACTTGAAGACCAAACACCACAACCTACAAAAAGGAGGCATGGATCATCTGTTTACACACTCAAGGAGATGGGAGAGGCAACATGTTCATTCAGTGATGATAATCTTCTTGGAAAAGGATTTGGCAGGGTCTACAGGGGTACTCTGTGGTCAAGAGAGGTAATGCTTGACCACCCAAATCTTGTTTCTTTGATTGGGTACTGTGCTGATGGGAAACATAGATTCCTAGTGTATGAATATATGTTTAATGGGAACCTGCAAGATCATTTGAATGGAATCAATGAAAGAAAAATGGATTGGCCTCTGAGACTCAAAGTGGCATTGGGAGCTGCAAAAGGTCTTGCTTATCTCCAGTCAAGTTCTTGTGTTGGAATTCCTATTTTTCATAGAGATTTAAAATCCACCAACATTCTTTTAATTAATGCCAATTTTGAAGAAAAGGTATAA 543 0.3978 MPFGLVSAWNKCRRSKSQDHSDPWIYKPAEFWQLEDQTPQPTKRRHGSSVYTLKEMGEATCSFSDDNLLGKGFGRVYRGTLWSREVMLDHPNLVSLIGYCADGKHRFLVYEYMFNGNLQDHLNGINERKMDWPLRLKVALGAAKGLAYLQSSSCVGIPIFHRDLKSTNILLINANFEEKV. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03899 180 Gene3D Phosphorylase Kinase; domain 1 42 87 - -
Seca12g03899 180 Pfam Protein tyrosine and serine/threonine kinase 88 173 IPR001245 GO:0004672|GO:0006468
Seca12g03899 180 Gene3D Phosphorylase Kinase; domain 1 88 113 - -
Seca12g03899 180 PANTHER OS01G0750732 PROTEIN 40 180 - -
Seca12g03899 180 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03899 180 Gene3D Transferase(Phosphotransferase) domain 1 114 180 - -
Seca12g03899 180 SUPERFAMILY Protein kinase-like (PK-like) 39 179 IPR011009 -
Seca12g03899 180 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03899 Seca-Chr12 101882715 101883754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03899 46 180 Receptor kinase-like Gene Family AT3G58690 40.361 3.17e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Seca12g03899 PK_Tyr_Ser-Thr 2.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03899 - - gmx:100820613 298.13