Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03887 ATGAGGGTTATTAAAGATGTGACTTCTGCGGTCTTATACTTGCATGAAGGGTGGGAAGCCAAAGTAGTGCATAGGGACATTAAGGCTAGCAATGTGTTGTTGGATAAGGATATGAATGGAAGGCTTGGAGATTTTGGGTTAGCCAGAATGCATAACCATGGTCAAATTTCTAGCACCACAAAATTGGTTGGAACAGTTGGGTACATGGCTCCTGAAGTGATTAGGACTGGATGA 234 0.4274 MRVIKDVTSAVLYLHEGWEAKVVHRDIKASNVLLDKDMNGRLGDFGLARMHNHGQISSTTKLVGTVGYMAPEVIRTG. 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03887 77 SUPERFAMILY Protein kinase-like (PK-like) 2 77 IPR011009 -
Seca12g03887 77 PANTHER - 2 75 - -
Seca12g03887 77 ProSiteProfiles Protein kinase domain profile. 1 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03887 77 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
Seca12g03887 77 Gene3D Transferase(Phosphotransferase) domain 1 1 77 - -
Seca12g03887 77 Pfam Protein kinase domain 3 75 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03887 Seca-Chr12 101485394 101485627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03887 1 77 Receptor kinase-like Gene Family AT4G04960 67.532 5.30e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca12g03887 Pkinase 2.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03887 - - gsj:114386544 145.976