Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03882 ATGAAGATCGAGGAATTGGAGGATTCAGAGTGTAGTAGGGATGAAAAGGAGAAATATGAGAGGCAAATTGTGACGGTTGATGCAAAGAGAGCGTTGGTCGGAGCAGGTGCTCGAATTCTGTTTTATCCGACGCTTTTGTATAATGTGCTTCGTAACAAGATTGAAGCTGAGCTCCGGTGGTGGGATCAAATTGATGAGTTTTTATTGCTCGGCGCAGTCCCGTTCCCCAAAGATGTTCCTCACTTGAAGAAGCTTGGTGTGGATGGTGTGATTACTCTGAATGAACCTTATGAAACTTTGGTGCCATCATCATTATATAATGTAAGTGTTGTCCTTTTTTCTTTTTAG 348 0.4224 MKIEELEDSECSRDEKEKYERQIVTVDAKRALVGAGARILFYPTLLYNVLRNKIEAELRWWDQIDEFLLLGAVPFPKDVPHLKKLGVDGVITLNEPYETLVPSSLYNVSVVLFSF. 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03882 115 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 55 103 IPR029021 -
Seca12g03882 115 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 107 - -
Seca12g03882 115 Gene3D Protein tyrosine phosphatase superfamily 51 106 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03882 Seca-Chr12 101267470 101268013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03882 22 106 Protein tyrosine phosphatase (PTP) family AT2G35680 74.118 2.47e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03882 - - gmx:100817410 202.986