Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03862 ATGAGCAATTCTTGTGTAAACTCCAAGAGAATAGTATTCCAATTCCTTTGTGGATTTCTTCTCTTATATATAAGCACATGCAAGGACTTTGCAACCGGAGCTACCCTGCAAAGAAATGAAACTGATCTACATGCCTTACTTGACTTGAAGAGTAAGATAGTTCATGATCCATTCCAAATTATGAGTTTGTGGAATGATTCCATCCACCACTGCAACTGGGTAGGAATTACCTGCAACATCTCCAATGGAAGGGTGATGTATTTGATCCTTGCAGACCTGACTTTGAGGGGCACTATTCCACCATCTATAGGAAATCTTACATTCCTAACCAGACTCAACCTGAGAAGTAATGGTTTCCATGGAGAGTTTCCTCAAGAGGTTGGGCGTCTACTATACCTGCAACATCTAAACATTAGTTACAATTCTTTTGGTGGTAGTATTCCAAGTAATCTAAGTCACTGCAAAGAACTACTTATATTAACTGCTGCTGGTAACAACTTCACTGGAAGGATTCCAGCATGGATAGGGAACTCTTCTTTATCTATAGTTAACCTTGCTGAGAACAACTTTCATGGAAGCATACCAAATGAGGTAGGGCAATTATCAAGCTTGAGAGCTCTTGTTTTAACAGGAAATTACTTGTCTGGAACAATTCCTCCTTCAATTTTCAATATTTCTACCCTATTCTTTTTCACAGTTACTCAAAATCATCTGCATGGTAACATACCAGCTGATGTTGGTTTTACTCTTCCTAATCTTGAAACATTTGCTGGTGGAGTCAACAATTTCACTGGAACAATTCCTGAGTCACTGTCAAATGCATCAAGGCTAGAAATTCTTGACTTTGCTGAAAATAGTCTAACTGGCACACTTCCTAAGAACATAGGAAGATTGTCCCATTTGATAAGACTCAATTTTGATGACAATAGACTTGGAACTGGGAAAGCTGGTGACCTGAATTTTCTAGCTTCCTTGGTTAACTGTACTGCTCTCGAAGTTTTGGGTCTTGCTGGAAATAAATTTGGAGGAGAATTGCCTAGCTCAATTACTAATCTTTCAACCCAATTGACTATACTCACATTAGGTAGAAATGCAATACAAGGAAATATACCTGTTGGGATTGGCAATCTGGCTAACCTGGCCCTTCTAGGATTGGAGGAAAACCACTTAACTGGTAGTGTTCCTGATGAATTAGGTAAGCTGCAAAATTTGCAAGGATTGTATCTTAATGTCAACAAATTTTCAGGAAGAATCCCATCCTTCTTAGGAAATTTATCTTCGTTAACAAAACTCTTTTTGGAGGAGAACACTTTTGAAGGAAGCATACCTTCTAGTCTTGGAAAATGTCAGAAGCTATTGGTACTTAGCCTTTATAGTAACAAACTTAGTGGAACCATACCAAAAGAAGTCGTTAGCATTTCTTCTTTAGCAATATACTTGAGCATGTCTCATAATGCTTTGTCAGGGACTCTGCCAGCTGAAGTGGGTAAGCTACATAATCTTGGAGCATTGGTGCTGTCTGAAAATAATCTTTCTGGAATCATCCCATCTTCTCTTGGCAGCTGCATTAGCTTGGAACGGCTGCATTTGCAGGGAAACTCTTTCCAGGGAGACATTCCTCAAACTTTAAACAATTTGAGAGGTTTACTTGATATAGATCTTTCACGCAATAACCTGTCTGGTAAGATTCCTGAATTTCTTGGTGAGTTCACAGAGCTCAAGCATCTCAATCTTTCTTACAACAATTTTGAAGGTGAAATACCAAAGAATGGGATCTTCAAGAATGCAACTTTGATTTCATTATATGGAAACAGCAAGCTCTGTGGTGGTATCCCAGAATTGAATTTTCCTGCATGCACTATCAGGAAAGCCTCTATGCTAAGAAAACTTCTTGCCTCCAAAGTGGCTATCCCTATAGCTTTTGCACTCATATTTGTACTCTTGCTATCATGTTTTCTTGCATTCTCCCCCATAGTAAAAAGAGAAAGAATGGGAACTTCCAGATCAATAACTGCTAATGACTTTGAATTGCAAGTTTCTTACTCAGAAATTGCAAGGTGCACTGGTGGGTTCTCCCAGGATAACTTGATTGGCTCAGGAAGTTTTGGTTCTGTATACAAAGGAACTCTTCCAGGTGATGGATCAACTGTTGCAGTTAAAGTATTAAATCTTCAACAAAGAGGAGCTTCAAGGATCTTCATTGATGAATGCCAATTTTTGAGAAGTATAAGGCACCGCAACCTTATCAAAATCATAACTGCTATCTCAAGTGTTGATCATCAAGGTAATGATTTCAAAGCTCTGGTGTTTGAGTTCATGTCTAATGGCAGTCTAGAAGACTGGTTGCATCCTATAAATAATCTGCAATACCAGACTAAGACATTGACATTTGTCCAAAGATTGAATATAGCAATTGATGTTGCATGTGCCCTGGAATATCTCCACCACTTTTGTCAAACTCCAATCATTCATTGTGATATCAAGCCAAGCAATGTACTTCTTGACAATGATATGGTAGCTCATGTTGGTGACTTTGGAATAGCTACATTTTTGTTTGAAGAATCATGCAGTTTTTCCAAACAATCAACTATTTCAGCTAGCCTAAAGGGCTCTATCGGGTACATCGCTCCAGAGTATGGAATGGGTGGCCACCCTTCTGCACTGGGAGATGTTTTCAGTTATGGGATACTATTACTTGAGATTTTCACAGGAAAAAGACCAACAAATGAGATGTTTGAAGGTGGCATTGGAATTAACCAGTTTGCAGCCTTGGCTTTACCAAATAATGCCATAGATATAATTGATCCTTTATTGCTCTCTGAGTTTGAAATTGATGATAGAAATAAAGGAGTTTTCACAGAGGAGACAGCAATATGGAGGGATCAGGAACCTGAAGTGCTTGCTGCAATGGAGAATTGCTTGGTTTCAGTGTTGCAAATTGGAGTGTCATGCTCTGCAACTTCACCAAGTGAAAGATTGCCTATGACTGTGGTTGTCAACAAACTGCATGCAATCAAGAACTCGTATTCAAGATTAAGTAAATTAGAATGGAATATGAAAAAGGAAAAGGGTGGAGGTAAAATGCCTTTGTAA 3093 0.387 MSNSCVNSKRIVFQFLCGFLLLYISTCKDFATGATLQRNETDLHALLDLKSKIVHDPFQIMSLWNDSIHHCNWVGITCNISNGRVMYLILADLTLRGTIPPSIGNLTFLTRLNLRSNGFHGEFPQEVGRLLYLQHLNISYNSFGGSIPSNLSHCKELLILTAAGNNFTGRIPAWIGNSSLSIVNLAENNFHGSIPNEVGQLSSLRALVLTGNYLSGTIPPSIFNISTLFFFTVTQNHLHGNIPADVGFTLPNLETFAGGVNNFTGTIPESLSNASRLEILDFAENSLTGTLPKNIGRLSHLIRLNFDDNRLGTGKAGDLNFLASLVNCTALEVLGLAGNKFGGELPSSITNLSTQLTILTLGRNAIQGNIPVGIGNLANLALLGLEENHLTGSVPDELGKLQNLQGLYLNVNKFSGRIPSFLGNLSSLTKLFLEENTFEGSIPSSLGKCQKLLVLSLYSNKLSGTIPKEVVSISSLAIYLSMSHNALSGTLPAEVGKLHNLGALVLSENNLSGIIPSSLGSCISLERLHLQGNSFQGDIPQTLNNLRGLLDIDLSRNNLSGKIPEFLGEFTELKHLNLSYNNFEGEIPKNGIFKNATLISLYGNSKLCGGIPELNFPACTIRKASMLRKLLASKVAIPIAFALIFVLLLSCFLAFSPIVKRERMGTSRSITANDFELQVSYSEIARCTGGFSQDNLIGSGSFGSVYKGTLPGDGSTVAVKVLNLQQRGASRIFIDECQFLRSIRHRNLIKIITAISSVDHQGNDFKALVFEFMSNGSLEDWLHPINNLQYQTKTLTFVQRLNIAIDVACALEYLHHFCQTPIIHCDIKPSNVLLDNDMVAHVGDFGIATFLFEESCSFSKQSTISASLKGSIGYIAPEYGMGGHPSALGDVFSYGILLLEIFTGKRPTNEMFEGGIGINQFAALALPNNAIDIIDPLLLSEFEIDDRNKGVFTEETAIWRDQEPEVLAAMENCLVSVLQIGVSCSATSPSERLPMTVVVNKLHAIKNSYSRLSKLEWNMKKEKGGGKMPL. 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03862 1030 Gene3D Phosphorylase Kinase; domain 1 673 772 - -
Seca12g03862 1030 FunFam LRR receptor-like serine/threonine-protein kinase EFR 662 772 - -
Seca12g03862 1030 ProSiteProfiles Protein kinase domain profile. 691 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03862 1030 Gene3D Ribonuclease Inhibitor 247 317 IPR032675 -
Seca12g03862 1030 Gene3D Transferase(Phosphotransferase) domain 1 773 1023 - -
Seca12g03862 1030 FunFam Leucine-rich repeat receptor-like protein kinase 39 196 - -
Seca12g03862 1030 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 219 315 - -
Seca12g03862 1030 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Seca12g03862 1030 Gene3D Ribonuclease Inhibitor 154 246 IPR032675 -
Seca12g03862 1030 PANTHER OS04G0122200 PROTEIN 68 202 - -
Seca12g03862 1030 SUPERFAMILY Protein kinase-like (PK-like) 665 1002 IPR011009 -
Seca12g03862 1030 FunFam LRR receptor-like serine/threonine-protein kinase EFR 317 625 - -
Seca12g03862 1030 Gene3D Ribonuclease Inhibitor 318 619 IPR032675 -
Seca12g03862 1030 Gene3D Ribonuclease Inhibitor 41 153 IPR032675 -
Seca12g03862 1030 SUPERFAMILY L domain-like 84 313 - -
Seca12g03862 1030 Pfam Leucine Rich Repeat 133 154 IPR001611 GO:0005515
Seca12g03862 1030 Pfam Leucine rich repeat 524 583 IPR001611 GO:0005515
Seca12g03862 1030 Pfam Protein kinase domain 692 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03862 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Seca12g03862 1030 SMART serkin_6 691 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03862 1030 SMART LRR_typ_2 498 521 IPR003591 -
Seca12g03862 1030 SMART LRR_typ_2 425 449 IPR003591 -
Seca12g03862 1030 SMART LRR_typ_2 201 225 IPR003591 -
Seca12g03862 1030 SMART LRR_typ_2 106 130 IPR003591 -
Seca12g03862 1030 SMART LRR_typ_2 570 595 IPR003591 -
Seca12g03862 1030 SMART LRR_typ_2 377 401 IPR003591 -
Seca12g03862 1030 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 773 1014 - -
Seca12g03862 1030 SUPERFAMILY L domain-like 354 609 - -
Seca12g03862 1030 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03862 Seca-Chr12 100289045 100292710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03862 39 1017 Receptor kinase-like Gene Family AT3G47570 45.069 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca12g03862 Pkinase 2.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03862 - - gmx:100785230 1494.56