Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03855 ATGCTCGATGATCATCAAGTGTCTTGGTCACATAGCACAGAAACTGAATCATCAGAGAAAGCAGCCTCCAGTGATGCTACTCATCATGGATTAATTGGTGATGCGGCAATTACCTCTTCCAACAATAATAACATATATATATATAGAAAATGCAAAAGTAGTGGGACTAAGCGAAACAATGGAGAAATCATGAGCGGAAGGATCACGTTTAGAACCAGATCGCAGCTTGAGATTATGGATGATGGATACAAATGGAGGAAATACGGGAAGAAGTCAGTGAAGAACAGTCCCAATCCAAGGTAA 303 0.4026 MLDDHQVSWSHSTETESSEKAASSDATHHGLIGDAAITSSNNNNIYIYRKCKSSGTKRNNGEIMSGRITFRTRSQLEIMDDGYKWRKYGKKSVKNSPNPR. 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03855 100 MobiDBLite consensus disorder prediction 1 20 - -
Seca12g03855 100 ProSiteProfiles WRKY domain profile. 74 100 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g03855 100 MobiDBLite consensus disorder prediction 1 27 - -
Seca12g03855 100 Pfam WRKY DNA -binding domain 80 100 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g03855 100 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 100 IPR044810 GO:0003700
Seca12g03855 100 SUPERFAMILY WRKY DNA-binding domain 71 100 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g03855 100 Gene3D WRKY domain 66 100 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03855 Seca-Chr12 100041224 100041678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03855 66 100 WRKY Transcription Factor Family AT5G26170 71.429 7.36e-16 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g03855 WRKY 1.5e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03855 - - gmx:100127396 114.39