Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03854 ATGAGACAAGACATGAAGTTGCAGTTCTCTATTGTTGCTCTTGTTCTATTTAGCTCCATACTGTCTCTTTTTGGCTTGATTGTAGCTGACTTGAACTCTGACCGACAAGCTCTCTTGGAGTTTGCTTCTTCTGTCCCACATGCCCCAAGGCTCAACTGGAATGACTCTTCTTCAATTTGTACCTCATGGGTTGGTGTGACTTGCAACTCAAATGGAACTCGTGTCATAGGTATCCATCTTCTAGGAATTGGATTAACTGGGTCCATTCCAGAGAACACCTTAGGAAAACTAGATGCTCTTAAGAGGAAAAACAGTAAAAGTAGTGGCATACTGAAAGGAAAGGCATCTTGTGCTAAAAAAACTGAAGTTTCAAAGAGTTTTGGGAGTGGGGTGCAAACGGCTGAAAAGAACAAGCTATTTTTCTTTGAAGGTTACTCTTATAGCTTTGACCTTGAGGATTTACTAAAAGCTTCAGCTGAAGTTCTTGGAAAAGGAAGCTATGGAACAACGTACAAGGCTGTTTTGGAAGAGGGAACAACAGTGGTAGTTAAAAGGTTGAAGGAAGTTGTGGTTGGAAAGAAGGAGTTTGAGCAAGTGAAACTTGCACTTGGAGCTGCTAAGGGAATTGCTTTCATTCACTCTGAAGGGGGTCCAAAATTTGCACATGGCAACATTAAGTCCACCAATGTGCTCATAACTCAAGAACTTGATAGCTGCATCTCTGATGTTGGATTGCCTCGTCTGATGAATGCCCCATCAACCATGTCTAGAGCCAATGGCTATAGAGCTCCAAAAGTTACTGATTCCAGAAAGATCGCACAGAAGTTTGATGTTTACAGCTTTGGTGTGGTGCTTCTTGAAATGCTTACAAGCAAGACTCCACTGAGATATCATGACTATGAGGATGTGGTTGATCTTCCAAGGTGGGTGAGGTCTGTTGTTAGAGAGGAATGGACTGCTAAAGTGTTTGATGAGGAGCTTCTGAGAGGGCAATATGTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCACTGGTATGTGTAGCTAAGGCACCAAATATGAGGCCTAAAATGGATGAAGCTGTTAGAATGATAGAGGAAATTAAACAGCCTGAGTTGAAGAACAGGCCATCCTCTGAGTCTGACTCTAATGTGCAGACACCAGAAGATTGA 1173 0.4237 MRQDMKLQFSIVALVLFSSILSLFGLIVADLNSDRQALLEFASSVPHAPRLNWNDSSSICTSWVGVTCNSNGTRVIGIHLLGIGLTGSIPENTLGKLDALKRKNSKSSGILKGKASCAKKTEVSKSFGSGVQTAEKNKLFFFEGYSYSFDLEDLLKASAEVLGKGSYGTTYKAVLEEGTTVVVKRLKEVVVGKKEFEQVKLALGAAKGIAFIHSEGGPKFAHGNIKSTNVLITQELDSCISDVGLPRLMNAPSTMSRANGYRAPKVTDSRKIAQKFDVYSFGVVLLEMLTSKTPLRYHDYEDVVDLPRWVRSVVREEWTAKVFDEELLRGQYVEEEMVQMLQIALVCVAKAPNMRPKMDEAVRMIEEIKQPELKNRPSSESDSNVQTPED. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03854 390 PANTHER OS05G0588300 PROTEIN 128 198 - -
Seca12g03854 390 SUPERFAMILY Protein kinase-like (PK-like) 160 366 IPR011009 -
Seca12g03854 390 Gene3D Ribonuclease Inhibitor 27 143 IPR032675 -
Seca12g03854 390 ProSiteProfiles Protein kinase domain profile. 75 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03854 390 Gene3D Transferase(Phosphotransferase) domain 1 187 387 - -
Seca12g03854 390 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 193 379 - -
Seca12g03854 390 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Seca12g03854 390 MobiDBLite consensus disorder prediction 366 390 - -
Seca12g03854 390 Pfam Protein kinase domain 198 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03854 390 ProSitePatterns Protein kinases ATP-binding region signature. 162 193 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03854 Seca-Chr12 100013208 100016156 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03854 114 379 Receptor kinase-like Gene Family AT3G08680 50.151 1.09e-91 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca12g03854 Pkinase 1.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03854 - - gmx:100818444 376.326