Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03853 ATGGCGCCGAAGCAGAGCACAAGGAAGGTTAGCAGAAACCCTGAATTGATAAGGGGAATCAGAAAATACTCGAGGTCCCAGATGTACCACAAGAGGGGCATCTGGGCTATCAAGGCCAAAAACGGCGGTGTTTTACCTCGCCACGATCCCAAACCTAAACCTGAAGCTCCTGCGGAGAAACCACCCAAATTTTACCCTGCTGATGATGTCAAGAAGCCCCTCATCAACAAGCACAAGCCAAAACCCGCTAAGCTCAGGGCTAGCATTACTCCCGGAACAGTGCTGATTCTTCTTGCTGGTAGATTTAAGGGAAAGAGGGTAGTGTTTTTGAAGCAGCTTCCTTCTGGTTTGCTTCTTGTAACTGGTCCTTTTAAGATTAATGGAGTTCCTTTGAGACGTGTGAACCAGTCCTATGTGATTGGCACATCAACCAAAGTGGATGTCTCTGCTGTTAATGTGGATAAATTTGATGACAAGTATTTTGCAAAGGAAGCCCAGAAAAAGAAGAAGGGAGAAGGAGAGTTCTTTGAGGCTGAGAAGGAGGAGAAAAATGTGTTGCCCCAGGAGAAGAAAGATGACCAGAAAACCGTCGACTCTGCATTGGTAAAGGCCATTGAGAGTGTTCCAGACTTGAAGGCTTATCTGGGTGCCAGGCTAAGCTTGATGAACAATGCAATAATAAAGAACTGTGTTAATGCTAAAATAGAGATGAAACATGTGGAATTCTATGTAGGTCATCTGTATGCCAATTGTTGTTGGAACTCAAATGGAACTCGCGTCATAGGTATCCATCTTCCAGGAATTGGATTAACTGGGTCCATTCCAGAGAACACCTTAGGAAAACTAGATGCTCTTAGGGACAATAACTTCTCAGGTCTAATTCCTTCCTCTGTCTCACCTAGACTCATTGCATTAGACCTTTCCTTTAACTCCTTCTCTGGCAGTATCCCACCTGCATTTCAGAACCTAAGAAGACTCATCTGGTTGTATCTCCAAAACAATTCCATATCTGGAACTATCCCTAACTTCAACCTTCCATGTCTCAAACATTTGAATTTGAGCTATAATAACTTGAATGGCTCAATTCCAAATTCCATCAAGACCTTCCCTTATAGTTCTTTTCTTGGGAATTCTCTCTTATGTGGGCCACCTCTCAATCATTTCTCTACAATCTCCCCTTCTCCATCTCCTTCCTCTTCTCACCAGCCACTCTCTCCTGCAACCACTCAAAACCAAAAAGCTGCTGCTACCCATAAGAAAAGCTTTGGCCTTGCTGAAAGGCATCTTGTGCTTGGAAAAACTGAAGTTTCAAAGAGTTTTGGGAGTGGGGTGCAAACGGCTGAAAAGGACAAGCTATTTTTCTTTGAAGGTTCCTCTTATAGCTTTGACCTTGAGGATTTACCAAAAGCTTCAGCTGAAGTTCTTGGAAAAGGAAGCTGTGGAACAGCATACAAGGCCGTTTTGGAAGAGGGAACAACAGTGGTAGTTAAAAGGTTGAAGGAAGTTCTTGGATCCTGA 1518 0.4361 MAPKQSTRKVSRNPELIRGIRKYSRSQMYHKRGIWAIKAKNGGVLPRHDPKPKPEAPAEKPPKFYPADDVKKPLINKHKPKPAKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSAVNVDKFDDKYFAKEAQKKKKGEGEFFEAEKEEKNVLPQEKKDDQKTVDSALVKAIESVPDLKAYLGARLSLMNNAIIKNCVNAKIEMKHVEFYVGHLYANCCWNSNGTRVIGIHLPGIGLTGSIPENTLGKLDALRDNNFSGLIPSSVSPRLIALDLSFNSFSGSIPPAFQNLRRLIWLYLQNNSISGTIPNFNLPCLKHLNLSYNNLNGSIPNSIKTFPYSSFLGNSLLCGPPLNHFSTISPSPSPSSSHQPLSPATTQNQKAAATHKKSFGLAERHLVLGKTEVSKSFGSGVQTAEKDKLFFFEGSSYSFDLEDLPKASAEVLGKGSCGTAYKAVLEEGTTVVVKRLKEVLGS. 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03853 505 MobiDBLite consensus disorder prediction 391 417 - -
Seca12g03853 505 Gene3D Ribonuclease Inhibitor 222 390 IPR032675 -
Seca12g03853 505 FunFam 60S ribosomal protein L6 87 171 - -
Seca12g03853 505 CDD KOW_RPL6 81 224 IPR041997 -
Seca12g03853 505 MobiDBLite consensus disorder prediction 40 83 - -
Seca12g03853 505 FunFam Leucine-rich repeat receptor-like protein kinase 299 388 - -
Seca12g03853 505 PANTHER 60S RIBOSOMAL PROTEIN L6 3 226 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca12g03853 505 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Seca12g03853 505 SUPERFAMILY Translation proteins SH3-like domain 87 177 IPR008991 -
Seca12g03853 505 MobiDBLite consensus disorder prediction 44 76 - -
Seca12g03853 505 Pfam Ribosomal protein L6e 126 226 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca12g03853 505 Gene3D - 87 170 IPR014722 -
Seca12g03853 505 SUPERFAMILY L domain-like 250 382 - -
Seca12g03853 505 Gene3D Phosphorylase Kinase; domain 1 435 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03853 Seca-Chr12 100008088 100011280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03853 1 221 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 80.180 9.86e-109 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03853 K02934 - gmx:100499766 367.851