Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03852 ATGCCTCTTCGAGCTTATTACTATTCCAAAGATGAGAAACTTCTAGTTTACAACTACATGCCAGAAGGCAACTTGTTTTTCTTGTTGCATGGAAATAGGGGTGCGGGAAGAACTCCATTAGATTGGGATTCTAGAGTGAAACTTGCACTTGGAGCTGCTAAGGGAATTGCTTTCATTCACTCTGGAGGGGGTCCAAAATTTGCACATGGAAACATTAAGTCAACCAATGTGCTCATAACTCAAGAACTTGATAGCTACATCTCTGATGTTGGATTGCCTCCTCTGATGAATGCCCCATCAACCATGTCTAGAGCCAATGGCTATAGAGCTCCAGAAGTTACTGATTCCAGAAAGATCACACAGAAGTCTGATGTTTACAACTTTGGTGTGGTGCTTCTTGAAATACTTACAGGCAAGACTCCACTGATATATCCTAGCTACGAGGATGTGGTTGATCTTCCAAGGTGGGTGAGGTGTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATGAGGAGCTTCTGAGAGGGCAATATGTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCACTGACATGTGTAGCTAAGGCACCCGATATGAGGCCTAAAATGGATGAAGCTGTTAGAATGATAGAGGAAATTAAACAGCCTGAGTTGAAGAACATGCCATCCTTTGAGTCTGACTCTAATGTGCTGACACCATGA 708 0.4308 MPLRAYYYSKDEKLLVYNYMPEGNLFFLLHGNRGAGRTPLDWDSRVKLALGAAKGIAFIHSGGGPKFAHGNIKSTNVLITQELDSYISDVGLPPLMNAPSTMSRANGYRAPEVTDSRKITQKSDVYNFGVVLLEILTGKTPLIYPSYEDVVDLPRWVRCVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALTCVAKAPDMRPKMDEAVRMIEEIKQPELKNMPSFESDSNVLTP. 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03852 235 ProSiteProfiles Protein kinase domain profile. 1 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03852 235 PANTHER OS05G0588300 PROTEIN 2 224 - -
Seca12g03852 235 Pfam Protein tyrosine and serine/threonine kinase 7 210 IPR001245 GO:0004672|GO:0006468
Seca12g03852 235 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 20 225 - -
Seca12g03852 235 SUPERFAMILY Protein kinase-like (PK-like) 3 213 IPR011009 -
Seca12g03852 235 Gene3D Transferase(Phosphotransferase) domain 1 20 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03852 Seca-Chr12 100004409 100005237 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03852 1 216 Receptor kinase-like Gene Family AT5G58300 67.593 5.48e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca12g03852 PK_Tyr_Ser-Thr 3.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03852 - - gmx:100818444 412.149