Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03841 ATGGATCCGGGTGCGATGATGAACGAGGGTTCATTTGCTAATGGGAGTAACAATACGGCGCCGTTTAGCTTGGCGGAGATCTGCCAGTTCCCGACGGCGATTAATGGAGGCGGAGGTGGCGGGGGATTGGGGCTTAGGAGACCGCAGTTCGGACATGGTTTGGGGCAGTTTGGGGATTTCTCAACCGGTCTGAACCGGGATGTTAATGGACCGGTTGGACCGGACCAGGGAACAGCGAACCACGGCGTTGGTAATAGGAAGAGGCGTGACTCGGAGGATGATTCGGCTAAGGGTGTGTCCACCAGGAATGGCGTGAATGATGGTGATGGAAAACGACTCAGAGCATCAGGGAACAGGAATGAGGGTGGTGATGGTAAAGTTGAAGGAGAAGTCAGTTCAGGAAAGCTTGCGGAGCAAAGCACTCAACCACCTCCTGATCCTCCTAAGCAAGATTACATCCACGTTCGAGCGAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGAAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCTCTTCAACGCCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCAAGACTGAACTCTGGCATTGAAGCATTTCCTCCTAAAGATTTTGGTCAGCAAACATTTGATCTAGCTGGCATGCCATTTGGTTCACAAGCTACAAGAGAGCATAGCAGAGGCTATTCACCAGAGTGGTTACATATGCAAGTAGGAGGTGGTTTTGAAAGAACAACGTAA 849 0.4794 MDPGAMMNEGSFANGSNNTAPFSLAEICQFPTAINGGGGGGGLGLRRPQFGHGLGQFGDFSTGLNRDVNGPVGPDQGTANHGVGNRKRRDSEDDSAKGVSTRNGVNDGDGKRLRASGNRNEGGDGKVEGEVSSGKLAEQSTQPPPDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIEAFPPKDFGQQTFDLAGMPFGSQATREHSRGYSPEWLHMQVGGGFERTT. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03841 282 MobiDBLite consensus disorder prediction 107 128 - -
Seca12g03841 282 FunFam Basic helix-loop-helix transcription factor 158 230 - -
Seca12g03841 282 Coils Coil 208 228 - -
Seca12g03841 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 211 IPR011598 GO:0046983
Seca12g03841 282 MobiDBLite consensus disorder prediction 56 152 - -
Seca12g03841 282 MobiDBLite consensus disorder prediction 82 97 - -
Seca12g03841 282 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983
Seca12g03841 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 228 IPR036638 GO:0046983
Seca12g03841 282 SMART finulus 167 217 IPR011598 GO:0046983
Seca12g03841 282 Gene3D - 158 234 IPR036638 GO:0046983
Seca12g03841 282 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 88 258 IPR024097 GO:0006355
Seca12g03841 282 CDD bHLH_AtBPE_like 151 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03841 Seca-Chr12 99845577 99849142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03841 1 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 58.848 1.11e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g03841 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03841 - - gmx:100784478 406.371