Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03840 ATGGCAACTTGTTCTTTTCCTGACCTTGCTGCTGAATTTCATCCCAAAATATATGATGTTTTTATCAGCTTCCGAGGCGAGGACACGCGTCAGAACTTCACAAGCCACCTTCGCCATGCTCTTCTTCGAAATCAGATCCAAATGTACGTGGATCAAGAAATGAACAAAGGGGATGAGATCTCGCAATCACTATTCAAAGCAATTGAAGATTCACAAATATCGATCATCGTTTTCTCAGAAAACTATGCTTCTTCCAAGTGGTGCTTGGATGAACTTCATAAAATACTCGAATGCAGGAACAAGGGACAGGATGTTATACCTGTATTCTATAAAGTTGACCCATCAAATGTGCGGAAGCTGAAAAGGAGCTACGATGATGCATTCACAAAACATGAGGAAGATTACAGCATCAACAGAAACAAGTTGACCAAATGGAAACATGCTGTTTCTGAAGCAGCCAACTTAGCAGGATATGACTCTGACAACTATAGGGAGGAATCAGAACTCATTGAAGAGATTGTCAAAGATGTTTTGAGAAAATTGAAAGATAGGCACCCACGAGAGGAGCCAAAATGCCCTTTTGGATTTCATGAAAACCTTGCACCTATTGAATCATCATGGTTAAAAGAATGTCGAGCAATTGGAATCTGGGGCATGGGTGGTATAGGAAAAACAACCATTGCTAAATGGCTATTTGACAAATACTCTTGTCAATATGAAAGTTCCTACTTCATGGAAAATATAAGGGAAAATTCAGGAAAAGGTGGGCAGGCACTATGTAATGAACTTGTTTCCAAGCTTTTAGATGAGAGTACTGCGACAATCAAATACACTTTTGTTAAGCGTAGGCTCAATTGTAAAAGTGTTTTCGTGGTGCTTGATGATGTGAGTACTTTGGAGCAATTAGAAAATCTGGATGGAGTACTTCAATGTTTGGGATCAAGCAGTAGAATTGTCATTACAACCAGAGACAAGCATGTTCTAATCAAAGGAAATGTTGACGCAATCCATGAGGTTGAGGGATTGAACTTTCAAGAATCACTTGAGCTTTTCAGTTTGAATGCTTTTAACCAATACCATCCTAAACCTGCATTTGAAGATTTATCAAGAAGGGCAATTGATTATGCGAAGGGTTTACCATTAGCTTTAAAGGTTTTAGGTTCTTTTCTTCATTCCAAAAATGAAAATGAATGGGAAAGTGCATTGAAGAAATTGAACAAGATTCCAAATGGACAAATTCACGGTGTTTTAAAATTGAGTTACGATGGATTAGACCGTGAAGAGAAGGAAATATTCCTAGATATTGCATGTTTTATGAATGGATATTGCGAACAACGTGTCATAAGCTTACTAGATAGCTATGGCTTCCATGCAGCTATTGGCATTAGAACCCTTCAAGAGAGAGCTCTTATAACCATAACTGGTTGGGACAATTCTGGGACTAAAAATGTTGAAGGCATAATATTAGATATTTCCAAAATTAGAGATCTACATTTGAGTGGTGACACATTCAAAAAGATGATGAATATGAGATTTTTGAAATTTTACTCACCATCAGGAGTTGGGTATTCTAAATTGCACCTTTCCTCACATCTCCAATTGTTTTCTGATAAATTAAGGTATCTAGAGTGGCATGGATTTCCTTCAAGGTCTCTGCCTCTAATATTTTGTCCGGAGAAGCTTGTTGAGCTTTTAATGCCAAACAGCCAGCTTGAGAAACTTTGGGATGGAGTGCAGGATTTGGCTAATTTAAAAAGAGTAGATCTTCGTGGATCCAAAAGGTTGATTGAACTCCCAGATTTCTCTCTGTCGTCAAATCTTGAAGAAGTAAATCTCTCCAAGTGTGAAAGTTTGTGTCGTGTTCATCCATCTCTCTTATCTCTCCCCTCACTAGTTTCTTTGAATGTATCAGCGTGCATAATCATTAAGTGTTTGCCTGCAAGCATCAACCAGCTTCCAAAGCTGAAATATCTTGACTTAAGTAATTGCAAGAGGCTTGATTCCCTGCCAGAACTTCCACAATCAATTGAAGTGATATATCTAAGTGGAAGCAATATTAAGTGTTTGCCTGCAAGCATCAACCAGCTTCCAAAGCTGAAATATCTTGACTTAAGTGATTGCAAGAGGCTTGAGTCCCTGCCAGAACTTCCACAATCAATTGAAGCGATATATCTAAGTGGAAGCAATATTAAGTGTTTGCCTGCAAGCATCAACCAGCTTCCAAAGCTGAAATATCTTGACTTAAGTGATTGCAAGAGGCTTGAGTCCCTGCCAGAACTTCCACAATCAATTGAAGCGATATATCTAAGTGGAAGCAATATTAAGTGTTTGCCTGCAAGCATCAACCAGCTTCCAAAGCTGAAATATCTTCACTTAAGTGATTGCAAGAGGCTTGAGTCCCTGCCAGAACTTCCACAATCAATTGAAGCGATATATTTAAGTGGAAGCAATATTAAGTGTTTGCCTGCAAGCATCAACCAGCTTCCAAAGCTGAGACATCTTGACTTAAGTGATTGCAAGAGGCTTGATTCCATGCCAGAACTTCCACAATCAATTGAAGTGATACATCTAGGTGGAAGCAATAAGTGTTTGCCTGCAAGCATCAACCAGCTTCCAAAGCTGAAACATCTTGACTTAAGTGATTGCAAGAGGCTTGATTCCCTGTCAGAACTTCCACAATCAATTGAATACATATATCTAAGTGGAAGCAATATTAAGTGTTTGCCTGCAAGCATCAACCAACTTCCAAAGCTGAAATATCTTGACATAATGGATTGCAAGATGCTTCAAGCTGTGCCAGAGCTTCCACAATCATTTGTAAAAGTTGAAGTGGAAGATTCCATATTTGATTTATCAGGAAGTGAAGTTACAGAATGGTTCAATGATTTATCTGGATGGGAATTTTATTTTAGAGCCCTTTTGGCAAAACTATACCTTTCATTAAGAAGGAACGAAGCTTGCAGCTTGGCTGAATACAAGTCCACATCCCCAGTCACTTCACCTCTCAAGGCCCAAATCATAAAGAGATGCAATTTGTGGAAGATGGTGGGGTTGGTAGCTAAGATTGATAATAAGCATGATGGTACTGCAAAGGAGTTCATAACCGGAGACAAAGGAGATGCAATTTGTGGAAGAGCCAAAGTTGAATAA 3150 0.3883 MATCSFPDLAAEFHPKIYDVFISFRGEDTRQNFTSHLRHALLRNQIQMYVDQEMNKGDEISQSLFKAIEDSQISIIVFSENYASSKWCLDELHKILECRNKGQDVIPVFYKVDPSNVRKLKRSYDDAFTKHEEDYSINRNKLTKWKHAVSEAANLAGYDSDNYREESELIEEIVKDVLRKLKDRHPREEPKCPFGFHENLAPIESSWLKECRAIGIWGMGGIGKTTIAKWLFDKYSCQYESSYFMENIRENSGKGGQALCNELVSKLLDESTATIKYTFVKRRLNCKSVFVVLDDVSTLEQLENLDGVLQCLGSSSRIVITTRDKHVLIKGNVDAIHEVEGLNFQESLELFSLNAFNQYHPKPAFEDLSRRAIDYAKGLPLALKVLGSFLHSKNENEWESALKKLNKIPNGQIHGVLKLSYDGLDREEKEIFLDIACFMNGYCEQRVISLLDSYGFHAAIGIRTLQERALITITGWDNSGTKNVEGIILDISKIRDLHLSGDTFKKMMNMRFLKFYSPSGVGYSKLHLSSHLQLFSDKLRYLEWHGFPSRSLPLIFCPEKLVELLMPNSQLEKLWDGVQDLANLKRVDLRGSKRLIELPDFSLSSNLEEVNLSKCESLCRVHPSLLSLPSLVSLNVSACIIIKCLPASINQLPKLKYLDLSNCKRLDSLPELPQSIEVIYLSGSNIKCLPASINQLPKLKYLDLSDCKRLESLPELPQSIEAIYLSGSNIKCLPASINQLPKLKYLDLSDCKRLESLPELPQSIEAIYLSGSNIKCLPASINQLPKLKYLHLSDCKRLESLPELPQSIEAIYLSGSNIKCLPASINQLPKLRHLDLSDCKRLDSMPELPQSIEVIHLGGSNKCLPASINQLPKLKHLDLSDCKRLDSLSELPQSIEYIYLSGSNIKCLPASINQLPKLKYLDIMDCKMLQAVPELPQSFVKVEVEDSIFDLSGSEVTEWFNDLSGWEFYFRALLAKLYLSLRRNEACSLAEYKSTSPVTSPLKAQIIKRCNLWKMVGLVAKIDNKHDGTAKEFITGDKGDAICGRAKVE. 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03840 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 435 IPR027417 -
Seca12g03840 1049 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 183 - -
Seca12g03840 1049 Gene3D - 183 336 IPR027417 -
Seca12g03840 1049 Gene3D - 14 182 IPR035897 -
Seca12g03840 1049 ProSiteProfiles TIR domain profile. 16 181 IPR000157 GO:0007165
Seca12g03840 1049 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 672 IPR044974 GO:0006952
Seca12g03840 1049 Gene3D - 341 425 IPR042197 -
Seca12g03840 1049 FunFam Disease resistance protein RPS4 481 674 - -
Seca12g03840 1049 Pfam Leucine Rich Repeat 560 579 IPR011713 -
Seca12g03840 1049 SMART LRR_CC_2 652 675 IPR006553 -
Seca12g03840 1049 SMART LRR_CC_2 696 729 IPR006553 -
Seca12g03840 1049 SMART LRR_CC_2 784 817 IPR006553 -
Seca12g03840 1049 SMART LRR_CC_2 828 860 IPR006553 -
Seca12g03840 1049 SMART LRR_CC_2 740 773 IPR006553 -
Seca12g03840 1049 SMART LRR_CC_2 871 901 IPR006553 -
Seca12g03840 1049 Pfam Leucine Rich repeats (2 copies) 675 717 IPR025875 -
Seca12g03840 1049 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 158 IPR035897 -
Seca12g03840 1049 SMART till_3 17 155 IPR000157 GO:0007165
Seca12g03840 1049 Pfam TIR domain 18 187 IPR000157 GO:0007165
Seca12g03840 1049 Gene3D Ribonuclease Inhibitor 677 764 IPR032675 -
Seca12g03840 1049 Gene3D Ribonuclease Inhibitor 466 676 IPR032675 -
Seca12g03840 1049 Gene3D Ribonuclease Inhibitor 854 948 IPR032675 -
Seca12g03840 1049 Gene3D Ribonuclease Inhibitor 765 853 IPR032675 -
Seca12g03840 1049 FunFam Disease resistance protein (TIR-NBS-LRR class) 343 425 - -
Seca12g03840 1049 Pfam NB-ARC domain 213 411 IPR002182 GO:0043531
Seca12g03840 1049 SUPERFAMILY L domain-like 764 943 - -
Seca12g03840 1049 SMART LRR_bac_2 652 672 - -
Seca12g03840 1049 SMART LRR_bac_2 892 911 - -
Seca12g03840 1049 SMART LRR_bac_2 805 824 - -
Seca12g03840 1049 SMART LRR_bac_2 761 780 - -
Seca12g03840 1049 SMART LRR_bac_2 717 736 - -
Seca12g03840 1049 SMART LRR_bac_2 740 760 - -
Seca12g03840 1049 SMART LRR_bac_2 696 716 - -
Seca12g03840 1049 SMART LRR_bac_2 784 804 - -
Seca12g03840 1049 SMART LRR_bac_2 673 692 - -
Seca12g03840 1049 SUPERFAMILY L domain-like 490 806 - -
Seca12g03840 1049 PRINTS Disease resistance protein signature 283 297 - -
Seca12g03840 1049 PRINTS Disease resistance protein signature 650 666 - -
Seca12g03840 1049 PRINTS Disease resistance protein signature 213 228 - -
Seca12g03840 1049 PRINTS Disease resistance protein signature 376 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03840 Seca-Chr12 99825137 99837342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03840 694 938 WRKY Transcription Factor Family AT4G12020 28.287 5.08e-14 75.1