Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03826 ATGGTGTCATTGTCGATGTTGCTATTTACGTACAATACTATAACTTCAATTTTTACTTTGTTGCAGGTTAAGCAGGATGGATTCTTTCCTGCAGATCTGCTTTTCTTGGCTAGTACAAATGCAGATGGTGTCTGCTACATTGAGACTGCTAATTTGGACGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAGACATGGGATTACCTGACTCCGGAAAAGGCATCTGAGTTTAAAGGTGAAATTCAATGTGAACAACCAAACAATTCATTGTATACCTTCACTGGAAATTTATTAATTCAAAAGCAAACACTTCCAATCAGTCCAAACCAAATTTTGTTACGAGGATGCAGTCTTCGGAATACAGAGTATATTGTTGGGGCTGTTATTTTTACTGGGCATGAAACAAAGGTGATGATGAATTCAATGAATGTGCCTTCCAAAAGAAGTACATTGGAGAGGAAGCTTGACAAGCTCATACTCACTCTATTTGCAACTCTCTTTGTGATGTGTTTTATTGGAGCCATAGGCAGTGCTATCTTTGTAAACAAGAAGCATTTTTACTTACATCTTGATTCATCAGAGGAGGGCTCAGCACAATTCAACCCGAGAAACAGATTTTTGGTTTTTCTTCTGACTATGTTTACCCTTATCACACTATACTCGACAATCATCCCCATTTCACTTTATGTGTCTATAGAGATGATAAAATTTATTCAGTCAACTCAATTTATCAACAAGGATTTGTGCATGTACCATAATGAAACCAATACACCTGCGTTGGCCAGAACATCAAATCTGAATGAAGAACTTGGGCAGGTGGAGTACATTTTCTCTGATAAAACTGGGACTCTAACAAGAAACTTGATGGAGTTCTTCAAGTGTTCAATTGGAGGAGATGTCTATGGAAATGGTGTGACTGAAATTGAGAGGGGAATAGCAGAGCGCGATGGCATGAAAATTGAGGAAAATAGATCACCCAATGCTGTGCAAGAGAAGGGTTTTAATTTTGAGGATGCTAGGCTTATGAGAGGAGCTTGGAGGAATGAGCCTAATCCTGATGTCTGCAAGGAATTCTTCAGATGCCTTGCTATATGCCATACTGTACTTCCTGAGGGTGATGAGTCCCCAGAAAAGATCAGATATCAGGCTGCATCACCTGACGAGGCTGCTTTGGTTATTGCTGCAAAGAACTTTGGTTTCTTCTTCTACAGGCGCACACCTACCATGATATATGTTCGTGAATCTCATGTTGAGAAGATGGGCAAAATTCAAGATGTATCTTATGAGATTTTAAATGTGCTTGAGTTTAATAGTACAAGGAAGCGTCAGTCTGTTGTATGTCGATATCCAGATGGAAGGCTTGTACTATACTGTAAGGTAATAGTTTCTTTAGGCTTCTGCACAAGATTAACAAGTTGCATGGATTTGGCTAAGATGACATCTTCTGAGGAACTTGCTTTCTCACAGGGTGCTGATACAGTAATCTACGAGAGACTGGCCGATGGTAATAATGATATCAAGAAAATCACTAGGGAGCATTTGGAACAATTCGGATCTGCTGGACTACGTACATTGTGCCTGGCCTACAGAGAATTGCATCCTGATGTTTATGAAAGCTGGAATGAGAAGTTTATCCAGGCCAAGTCTTCTCTGCATGATCGTGAAAAGAAGTTAGACGAGGTGGCAGAACTAATAGAAAAGGATCTCATTTTAATTGGTAGCACTGCAATAGAAGACAAGCTTCAAGAGGGAGTGCCAGCTTGCATAGAGACTCTTCAAAGAGCCGGTATTAAAATTTGGGTTCTGACAGGTGACAAGATTGAAACAGCAATAAACATAGCCTATGCATGCAATTTAATAAACAATGAGATGAAGCAATTTGTTATCAGTTCAGAAACCGATGCAATTAGAGAAGTTGAAGATAGGGGTGATCAAATAGAAATTGCACGTTTTATTAAAGAAGAAGTGAAAAAAGAGCTGAAGAAGTGCCTTGAGGAAGCCCAGAGCTATTTTCACTCCTTATCTGGACCAAAATTAGCACTTGTAATTGATGGGAAGTGTCTAATGTATGCATTGGATCCAAGTTTAAGAGTGATGCTGCTGAATCTAAGTTTGAATTGTCATGCTGTTGTTTGCTGCCGAGTTTCTCCCTTACAGAAAGCACAGGTCACAAGTATGGTCAAGAAAGGTGCACGGAAAATAACACTTAGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGCATAAGTGGGTTGGAGGGAATGCAAGCTGTTATGGCTAGTGATTTTGCCATTGCACAGTTTCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGGTGGTCATATTTGCGAATATGCAAGGTGGTGATATACTTCTTTTACAAGAATCTCACATTTACTCTTACTCAGTTTTGGTTTACTTTTCAAACTGGGTTTTCTGGTCAAAGATTCTATGATGATTGGTTTCAGTCATTATATAATGTTATTTTCACAGCACTGCCGGTGATCATTGTTGGACTATTTGACAAGGATGTCAGTGCATCTCTATCCAAGAAGTATCCTGAACTATACATGGAGGGAATAAGAAATGTCTTCTTCAAATGGAAAGTTGTAGCTATATGGGCCTTTTTTTCTGTCTACCAGTCTCTAATATTCTACTATTTTGTGAGTACATCAAATCTAAGTGCTAAAAACTCAGCAGGAAAGATATTTGGACTCTGGGATGTCAGTACATTGGCCTTCACTTGTGTTGTAATAACTGTCAACTTGCGACTACTTATGATTTGTAATTCAATCACAAGATGGCACTATATCAGTGTTGGTGGAAGTATATTAGCCTGGTTTATTTTTATTTTTATATATTCAGGGATTTCCACTCCTTATGATCGACAGGAGAATATTTATTTTGTCATATATGTCTTGATGAGTGCATTATATTTCTACCTCACACTACTACTAGTTCCTGTTGCTGCACTTTTCTGTGACTTTGTTTACCAAGGGGTTCAAAGATGGTTCTTCCCCTATGATTATCAGATTATTCAAGAAATGCATAGACATGAACCTGATTTAACTGGTAGGACACAGCTGCTGGAGATAGGGAATCAGCTTACGCCAGCTGAGGCAAGGAGTTATGCTATATCTCAACTCCCACGCGAGATATCAAAGCACACCGGATTTGCTTTTGATTCTCCTGGGTACGAGTCGTTTTTCGCTGCACAGCTTGGTGTATATGCCCCACCAAAGGCATGGGATGTTGCAAGACGAGCTAGCATGAAATCACGGCCCAAGAATGGGCAGCAAAAGTAA 3339 0.395 MVSLSMLLFTYNTITSIFTLLQVKQDGFFPADLLFLASTNADGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEIQCEQPNNSLYTFTGNLLIQKQTLPISPNQILLRGCSLRNTEYIVGAVIFTGHETKVMMNSMNVPSKRSTLERKLDKLILTLFATLFVMCFIGAIGSAIFVNKKHFYLHLDSSEEGSAQFNPRNRFLVFLLTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLCMYHNETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGDVYGNGVTEIERGIAERDGMKIEENRSPNAVQEKGFNFEDARLMRGAWRNEPNPDVCKEFFRCLAICHTVLPEGDESPEKIRYQAASPDEAALVIAAKNFGFFFYRRTPTMIYVRESHVEKMGKIQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKVIVSLGFCTRLTSCMDLAKMTSSEELAFSQGADTVIYERLADGNNDIKKITREHLEQFGSAGLRTLCLAYRELHPDVYESWNEKFIQAKSSLHDREKKLDEVAELIEKDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFVISSETDAIREVEDRGDQIEIARFIKEEVKKELKKCLEEAQSYFHSLSGPKLALVIDGKCLMYALDPSLRVMLLNLSLNCHAVVCCRVSPLQKAQVTSMVKKGARKITLSIGDGANDVSMIQAAHVGVGISGLEGMQAVMASDFAIAQFRYLADLLLVHGRWSYLRICKVVIYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYMEGIRNVFFKWKVVAIWAFFSVYQSLIFYYFVSTSNLSAKNSAGKIFGLWDVSTLAFTCVVITVNLRLLMICNSITRWHYISVGGSILAWFIFIFIYSGISTPYDRQENIYFVIYVLMSALYFYLTLLLVPVAALFCDFVYQGVQRWFFPYDYQIIQEMHRHEPDLTGRTQLLEIGNQLTPAEARSYAISQLPREISKHTGFAFDSPGYESFFAAQLGVYAPPKAWDVARRASMKSRPKNGQQK. 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03826 1112 Gene3D - 573 780 IPR023214 -
Seca12g03826 1112 SFLD Haloacid Dehalogenase 261 791 - -
Seca12g03826 1112 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 21 1067 - -
Seca12g03826 1112 Pfam Cation transport ATPase (P-type) 376 461 - -
Seca12g03826 1112 FunFam Phospholipid-transporting ATPase IC 276 288 - -
Seca12g03826 1112 SUPERFAMILY HAD-like 274 796 IPR036412 -
Seca12g03826 1112 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 343 578 IPR023299 GO:0000166
Seca12g03826 1112 Pfam Phospholipid-translocating P-type ATPase C-terminal 768 1018 IPR032630 -
Seca12g03826 1112 SFLD p-type atpase 261 791 IPR044492 -
Seca12g03826 1112 Gene3D - 19 144 - -
Seca12g03826 1112 SUPERFAMILY Calcium ATPase, transmembrane domain M 67 1018 IPR023298 -
Seca12g03826 1112 Gene3D - 416 572 IPR023299 GO:0000166
Seca12g03826 1112 PRINTS P-type cation-transporting ATPase superfamily signature 740 759 - -
Seca12g03826 1112 PRINTS P-type cation-transporting ATPase superfamily signature 279 293 - -
Seca12g03826 1112 FunFam Phospholipid-transporting ATPase 573 780 - -
Seca12g03826 1112 NCBIfam phospholipid-translocating P-type ATPase 20 461 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca12g03826 1112 NCBIfam phospholipid-translocating P-type ATPase 485 1026 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca12g03826 1112 CDD P-type_ATPase_APLT_Dnf-like 23 900 - -
Seca12g03826 1112 NCBIfam HAD-IC family P-type ATPase 713 819 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g03826 1112 ProSitePatterns E1-E2 ATPases phosphorylation site. 281 287 IPR018303 -
Seca12g03826 1112 SUPERFAMILY Calcium ATPase, transduction domain A 21 140 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03826 Seca-Chr12 99540966 99556048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03826 20 1107 Primary Pumps ATPases AT1G59820 78.329 0.0 1823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03826 K14802 - gmx:100815547 2008.8