Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03822 TGTGCTAGCCAGCCTTGTATTCTCACACTCAGCAAGATCTCACACAGAAACAGAATCAGAAGCAGAAGGATTTCGTGCAGAGAGGACAAAGTAACGCACATGGTGTCGTCGGGGTTGCCGGGAAATGACATCATGTCAGTGACAATGGCAGGAGAGTTTAGGCTCCGATGGGATGTGTTCTTGAGCTTCAGAGGGGAGGACACGCGCGAGCCCTTCACGAAAAGCCTCTATGAGTCACTCCACACTTGTGGGGTTCGTGCTTTCATGGACGACCAAGGATTGGAGCGTGGCGACGAGATAGCACCGTGTCTTCTGGAGGCCATTGATGACTCTGCAGCTTCCATTGTGGTTATCTCTCCAAACTATGCTTCTTCTCATTGGTGTCTCGAGGAGCTCGCCAGGATTTGTCAACATGGGAGGCTCGTGCTGCCCGTTTTCTACCGGGTCGACCCGTCTCATGTCCGAGCACAAACGGGTCCCTTTGAGACAGGTTTCAGGTCACATGAACAGAGTTTTGATGAAGAGAAGGTTTTGAGGTGGAGGAAAGCTATGAACAAAGTTGGTGGAGTTGCAGGTTTGGTTTTCAACGGCAGTGACACTGAGCACGGGGATCTGATTCGCCTTTTGGTGCAAAGGGTTTTGAAGGAACTGAGTAATACTCCGATGGTTGTGGCTGAGTATGGAGTGGGGCTTGAGGATCGTGTTGGAAAGGTGATGGAGCTGTTACAAATTCAATCCAATGGTGTCAGGGTTTTGGGGCTGTATGGGATGGGTGGGGTAGGTAAGACAACCCTGGCTAAGGCTCTTTTCAATAGCCTTGTTGGTCGTTTTAAGCGTAGCTGCTTCATTTCAAATGTCAGACATGTTTCATCAGAACAGGATGGTTTGGTTTCTCTTCAAAACAAAATCAATGAAGAACTCTTCCCTCCAAAAAAGAGTGGTATCAATGGTAGTGTTGATGAGAATGATGATGTTGATGATGCTGGTGATGTCAGTGATGATGATCCTGTTCTGCTAGTCTTGGATGATGTTGATGATGTAAAGCAGCTTGATACTTTGATTGGTAAGAGGGAACAGTTTTATGAAGGAAGCCGTATAATAATTACCACAAGAGATAGACATGTTCTGCCCCAGGGTCATGTCAATGATTTGTATGAGATTAAGGAATTGTATCCTTCTGATGCTCTAGAGTTATTCAGTTACCATGCACTGAGGAAAAAGGAACCTCCCAAAATTTTTCTGAATCTGTCAAAGCAAATTGTGTCTCTTACAGGAAGAATGCCTTTGGCTCTGGAAGTGTTTGGTTCCTTTTTGTTTGGTAAGAGAAGGGTGGAGGGATGGGAGGATGCTCTGGAGAAGCTGAGAAGAATTCGCCCTGGAAAACTTCAGGATGTGTTGAAGATAAGTTATGATGGTTTAGATGAACAAGAGAAGTGCATATTCCTTGATATTGCTTGTTTCTTTCTCCAAATGGGAATGAAACGTGATGATGTGACTGATATATTGAGAGGTTGTGGTTTTAGGGGAGAGATAGCTATCACAGTCCTTATAGAAAAATGCTTAATCAAAATCACTGAGGAAAATACCCTGTGGATGCATGACCAAATTAGAGACATGGGAAGACAAATTGTTATTGATGAAAACCATGTCGATCTGGGTATGCGTAGTAGACTGTGGGATCATGCTGAAATCATGGATGTTTTGAAGAGTGAGAAGGGAACAAGATGTACTCAAGGAATTGTTCTAGGCTTTGAGGAACAAATCAAAGAATGGATTACGGATTATCCTCAACCTCAAGCAGAGAAAAATAAGGAGGTTATACTTCATACAAAATCCTTTGAACCAATGGTTAACCTAAGACTGCTTCAGATCAATAATCTAATATTGGAAGGCAAGTTTCTTCCAGCTGCACTGAGGTGGCTACAATGGCAAGGATGCCCTTTAGAATGCATGCCTTTGGACTCTTGGCCTCGAGAACTGGCTGTCCTTGATCTCTCAAACAGCAAGAAAATAAAAAGCTTGTGGGGACTGGAAGGTTACAAGGTACCACAGAACCTAATGGTCATGAACCTCTCCTACTGCATCCAACTTTCTGCACTCCCTGATTTATCTACGTGTAGCCATCTAGAGAAGATTGATCTGGAGAACTGCATTAATCTAACTAGGATCCATGAATCAATTGGCAGTTTGACTAGCTTACGTGGTTTGAATTTGACAAGGTGTTCAAAACTCATTGACCTTCCCAGTGATGTTTCTAGACTGAAACATCTAGAGAACCTCTTTCTTTCTCAATGCTCAAAGTTGAAAGCATTACCCAAAAGCATAGGCAACCTGAAATCCTTGAAAACACTTTTTGCTGATAACACAGCTATACCAGAGCTTCCCCAGTCCATTTTCCGCCTGACCAAACTCAAACGGCTTGTTTTAGATCATTGCCTATATTTGAGAAGGCTACCAAACTGCATTGGGCATCTATGTTCTTTGCAAGAATTATCTCTTGATTTTTCTGGGTTAGAAGAATTACCCAACTCTATTGGATCCTTGAAAAACCTTGAGACATTCAGTTTGATTGGGTGTAAATTTCTCACTGTGATTCCTGACTCTATAGGCAATCTCATATCATTGACAGAAGTTTTGTTTACTAACAGTGGAATTACAGAACTCCCTGCTACCATCGGTTCTTTATCCTATCTGAGGAAGCTATCTGCTGGACACTGTAAATTTCTCAGTGAACTACCTGATTCAATGAAAAGTTTGGCCTCAATAGTTGAACTTCAGTTAGATGGAACAACTATCACAAATTTGCCAGATCAGATTGGAGAGATGAAACAGCTGAGGACACTTGAGATTGGTAATTGTATCCATCTTGAAACTTTACCGGAATCTATTGGCAACCTAGCATCGCTTACTACACTGAACATAGTCAATGGAAAAATCAGGGAATTGCCAGATTCCATTGGATTACTGGAAAATCTTGTCACCTTAGTATTGAACAAGTGCAGAATGCTCAGAAAGCTTCCAGCTTCAATAGGAAATTTGAAATCTCTATGCCACTTTGAGATGGAGGAAATGGCTATGTCAGACTTACCTGAAAGTTTTGGGATGCTCTCAAGCTTGAGAACATTGAGAATGGCAAAGAGGCCTCATTTTGTTCCCACTGAAAATAGCTTTCTCGCAGGACCTGAAGTAGTTCCCATTTCTGTAGAGAACCCCAGCTCTTTTGTACTTCCATCTTCCTTCTGCAATCTTACCTTGCTATATGAGCTGGATGCCAGTGCCTGGAGAATATCCGGAAAGATTCCAGATGATTTTGAGAAGTTATCATCATTAGAAACTTTAAAATTGGGACAAAACAATTTTCACAGCCTTCCTTCCAGCTTGAAAGGCCTTTCCATTCTCAAGAAGCTGGCACTGCCAAACTGCAGGGAGCTGATCTCTCTCCCCTCACTTCCTTCAAGCTTGATTGAACTGAACGTTGAAAACTGTTCTGCATTAGAAACCATTCATGACATTTCAAATTTAGAGAATTTGCAGGAGTTAAAACTCACAAATTGTGAAAAAGTCGTGGATATTCCAGGTCTAGAATGCTTGAAGTCCTTGAGAAGGTTGTACCTGAGTGGTTGCACTGCATGCTCCTCCCAAATATGTAAAAGACTCTCAAAGGTTGCATTGACGAATTTGGAGAACTTGAGCATGCCAGGAGCCAGATTACCTGAATGGTTTTCAGGACAAACTGTCAGCTTTTCCAAGCCCAAAAATCTTGAACTAAAAGGTGTAATTATAGGTGTTATTTTTTCAATCAACCATAATATACCAAATATAATGAGAGATAAAATGCCTGGAATGTTAGATGTTCAAGCAAATGTTCTCAAACAGGGCAAAACTATTTTCAGAACAGTGTTAAACATACGTGGGGTGCCAAGGACGGATGAGGAACACATACACTTGTGTAGGTACCAAGATTACCATCAGTTGGTTGCCTTTTTAAGAGATGCTGATACATTTTGTGTGACTATGAGAAGTCCTCCTTTTGATAAGGGGTTGGAGTTGAAAAAATGTGGGGTTCATTTAATCTTTGAAGGGGATGATGATTATGACGGAGATGAAGAATCATTGGACAAAGGCCTGCAATCTGTTTCAGAAAGATTGGCCAAGTTTTTCAACACTTGTGAAGATGGCCATCCCATCTATGCCACTGAGAGTGAAGATGTGTACCAAAAGGAATTGGAGCAGGAACAACAAGAGCCAAGATCATCTCGTATTATTACACTTAAAAGTAATTCCATTCTTCTATTCCTGATCAGTCTATTCTTTGCGCTATTGGGTTGGTTTTGCTTGAGGTGTCATGTAAGGCCCACTCCCAAAACGGCGCAACCATGCGAACATAGTAGAAGCAGAACCCACATAAATTTCACATAA 4419 0.4196 CASQPCILTLSKISHRNRIRSRRISCREDKVTHMVSSGLPGNDIMSVTMAGEFRLRWDVFLSFRGEDTREPFTKSLYESLHTCGVRAFMDDQGLERGDEIAPCLLEAIDDSAASIVVISPNYASSHWCLEELARICQHGRLVLPVFYRVDPSHVRAQTGPFETGFRSHEQSFDEEKVLRWRKAMNKVGGVAGLVFNGSDTEHGDLIRLLVQRVLKELSNTPMVVAEYGVGLEDRVGKVMELLQIQSNGVRVLGLYGMGGVGKTTLAKALFNSLVGRFKRSCFISNVRHVSSEQDGLVSLQNKINEELFPPKKSGINGSVDENDDVDDAGDVSDDDPVLLVLDDVDDVKQLDTLIGKREQFYEGSRIIITTRDRHVLPQGHVNDLYEIKELYPSDALELFSYHALRKKEPPKIFLNLSKQIVSLTGRMPLALEVFGSFLFGKRRVEGWEDALEKLRRIRPGKLQDVLKISYDGLDEQEKCIFLDIACFFLQMGMKRDDVTDILRGCGFRGEIAITVLIEKCLIKITEENTLWMHDQIRDMGRQIVIDENHVDLGMRSRLWDHAEIMDVLKSEKGTRCTQGIVLGFEEQIKEWITDYPQPQAEKNKEVILHTKSFEPMVNLRLLQINNLILEGKFLPAALRWLQWQGCPLECMPLDSWPRELAVLDLSNSKKIKSLWGLEGYKVPQNLMVMNLSYCIQLSALPDLSTCSHLEKIDLENCINLTRIHESIGSLTSLRGLNLTRCSKLIDLPSDVSRLKHLENLFLSQCSKLKALPKSIGNLKSLKTLFADNTAIPELPQSIFRLTKLKRLVLDHCLYLRRLPNCIGHLCSLQELSLDFSGLEELPNSIGSLKNLETFSLIGCKFLTVIPDSIGNLISLTEVLFTNSGITELPATIGSLSYLRKLSAGHCKFLSELPDSMKSLASIVELQLDGTTITNLPDQIGEMKQLRTLEIGNCIHLETLPESIGNLASLTTLNIVNGKIRELPDSIGLLENLVTLVLNKCRMLRKLPASIGNLKSLCHFEMEEMAMSDLPESFGMLSSLRTLRMAKRPHFVPTENSFLAGPEVVPISVENPSSFVLPSSFCNLTLLYELDASAWRISGKIPDDFEKLSSLETLKLGQNNFHSLPSSLKGLSILKKLALPNCRELISLPSLPSSLIELNVENCSALETIHDISNLENLQELKLTNCEKVVDIPGLECLKSLRRLYLSGCTACSSQICKRLSKVALTNLENLSMPGARLPEWFSGQTVSFSKPKNLELKGVIIGVIFSINHNIPNIMRDKMPGMLDVQANVLKQGKTIFRTVLNIRGVPRTDEEHIHLCRYQDYHQLVAFLRDADTFCVTMRSPPFDKGLELKKCGVHLIFEGDDDYDGDEESLDKGLQSVSERLAKFFNTCEDGHPIYATESEDVYQKELEQEQQEPRSSRIITLKSNSILLFLISLFFALLGWFCLRCHVRPTPKTAQPCEHSRSRTHINFT. 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03822 1472 Gene3D - 52 218 IPR035897 -
Seca12g03822 1472 Gene3D Ribonuclease Inhibitor 1059 1260 IPR032675 -
Seca12g03822 1472 MobiDBLite consensus disorder prediction 311 330 - -
Seca12g03822 1472 SUPERFAMILY L domain-like 531 953 - -
Seca12g03822 1472 SUPERFAMILY L domain-like 920 1239 - -
Seca12g03822 1472 SMART LRR_typ_2 966 989 IPR003591 -
Seca12g03822 1472 SMART LRR_typ_2 778 801 IPR003591 -
Seca12g03822 1472 SMART LRR_typ_2 919 942 IPR003591 -
Seca12g03822 1472 SMART LRR_typ_2 1107 1129 IPR003591 -
Seca12g03822 1472 SMART LRR_typ_2 825 848 IPR003591 -
Seca12g03822 1472 SMART LRR_typ_2 872 895 IPR003591 -
Seca12g03822 1472 SMART LRR_CC_2 1174 1200 IPR006553 -
Seca12g03822 1472 SMART LRR_CC_2 706 733 IPR006553 -
Seca12g03822 1472 SMART LRR_CC_2 848 875 IPR006553 -
Seca12g03822 1472 SMART LRR_CC_2 895 922 IPR006553 -
Seca12g03822 1472 SMART LRR_CC_2 942 969 IPR006553 -
Seca12g03822 1472 Gene3D - 219 382 IPR027417 -
Seca12g03822 1472 SMART till_3 56 190 IPR000157 GO:0007165
Seca12g03822 1472 ProSiteProfiles TIR domain profile. 55 221 IPR000157 GO:0007165
Seca12g03822 1472 Gene3D Ribonuclease Inhibitor 599 746 IPR032675 -
Seca12g03822 1472 SUPERFAMILY Toll/Interleukin receptor TIR domain 54 192 IPR035897 -
Seca12g03822 1472 PRINTS Disease resistance protein signature 424 438 - -
Seca12g03822 1472 PRINTS Disease resistance protein signature 331 345 - -
Seca12g03822 1472 PRINTS Disease resistance protein signature 251 266 - -
Seca12g03822 1472 PRINTS Disease resistance protein signature 728 744 - -
Seca12g03822 1472 Pfam NB-ARC domain 232 460 IPR002182 GO:0043531
Seca12g03822 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 484 IPR027417 -
Seca12g03822 1472 Gene3D - 390 474 IPR042197 -
Seca12g03822 1472 Pfam TIR domain 57 220 IPR000157 GO:0007165
Seca12g03822 1472 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 58 820 IPR044974 GO:0006952
Seca12g03822 1472 Gene3D Ribonuclease Inhibitor 747 1054 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03822 Seca-Chr12 99466647 99478600 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03822 57 901 WRKY Transcription Factor Family AT4G12020 29.770 7.62e-79 286