Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03818 ATGATGTCGTCGGGGTTCAGACTCCGATGGGACGTGTTCTTGAGCTTCAGAGGCGAGGACACACGCGAGCCCTTCACGAAGAGCCTCTACGATTCACTCCACACTTGTGGGGTTCGTGCTTTCATGGACGATGAAGGGTTGGAGCGTGGTGACGATATAGCACCGTCTCTTCTGGAGGCCATTGATGACTCTGCAGCATCCATTGTGATCATCTCTCCAAACTATGCTTCCTCTCATTGGTGTCTTGAAGAGCTCGCCAGGATTTGCCACTGCGGGAGGCTCGTCCTGCCCGTTTTCTACCGGGTCGACCCGTCTCATGTCCGAAGACAAACGGGTCCCTTTGAAACGGGTTTCAAGTCACATGAACAGAGGTTTGAGGAAGAGAAGGTTTTGAAGTGGAGGAAAGCTATGAACAAAGTTGGTGGAGTTGCAGGTTTTGTTTTCAAGGGCAGTGACAGTGAGCATAAGGATCTGATTCGCCTTTTGGTGAAGAGGGTTTTGAAGGAGCTGAGTAATACTCCGATGGTTGTGGCTGAGTATGCAGTGGGGCTTGAAGATCGAGTTGGGAAAGTGATGGAGCTTTTACAAGTTGAATCCAATGGTGTTAGAATTTTGGGGCTGTATGGGATGGGTGGGATTGGTGAGACAACCCTGGCCAAAGCTCTTTTCAATAGCCTTGTTGGTCGTTTTGAGCGTCGCTGCTTCATTTCAAATGTCAAACATTATTCATCCAAAGAAGGTGGTTTGGTTTCTCTTCAAAGCAAAATCATTAGTGATCTTTCCCCTGAAGAAGAAGGGTCAAGAGTTCATATCAGTGATGTTAATGTTGGTATTTCTTCTATTAGACGAGTTCTGCTAGTCTTGGATGATGTTGATGATGTAAACCAACTTGATGCTTTGATTGGTAAGAGGGAATGGTTTTATGAAGGAAGTCGTGTAATAATTACCACAAGGGATAAACATGTTTTGCCCCAGAGTCATGTCAATCAGTTGTTTGAAGTTCAGGAATTGTATCCTTCTGAAGCTCTAGAGTTATTCAGTTACCATGCACTGAGAAAAAAAGAACCCCCCAAAAAATGGTTGAATCTGTCAAAGCAAATTGTGTCTCTTACAGGAAGAATGCCTTTGGCTCTGGAAGTGTTTGGTTCCTTTTTGTTTGGTAAGAGGAGGGTGGAGGAATGGGAGGATGCTCTGGAGAAGCTGAGAAGAATTCGCCCTGAAAAACTTCAAGATGTGTTGAAGATAAGTTATGATGGTTTAGATGAACAAGAGAAGTGCATATTCCTTGATATTGCTTGTTTCTTTCTCCAAATGGGAATGAAGCGTGATGATGTAGTTGATATATTGAGAGGTTGTGGTTTTAGGGGAGAGATAGCAATAACAGTCCTTGTAGAAAAATGCTTAATCAAAATCACTCAGGATAACACCCTGTGGATGCATGATCAAATTAGAGACATGGGAAGGCAAATTGTTATTGATGAAAACCATGTTGATCTGGGTATGCGTAGTAGACTGTGGGATCGTGCTGAAATCATGGCTGTTTTGAAGAGTGAGAAGGGAACAAGATGTATTCAAGGAATTGTCCTAGACTTTGAGGATCAATTAAAACGATGGAATACAAATTATCTTCAATCTCAAGCAAAGGAAAACAACGAGGTTATACTTCAGACGAAATCCTTTGGACCAATGGTTAACCTGAGACTGCTTCAGATTAATCATCTGAGATTGGAAGGCAAGTACCTTCCAGCTGAACTGAAGTGGCTAAAATGGCGAGGATGTCCTTTAGAATGCATTCCTTTGGACTCTTGGCCTCGAGAGTTGGCTGTCCTTGATCTCTCAAACAGCAACAAAATAAAATACTTGTGGGGACAAGAAGGTGACAAGGTACCACAGAACCTAATGGTCATGAACCTCTCCTACTGCAGCCAACTTTCTGCACTCCCTGATTTATCTAGGTGTAGACGTCTAGAGAAGATTGATTTGGGGAACTGCATTAATCTAACTAGGATCCATGAATCAATCGGCAGTTTGACTAGCTTACGTAGTTTGAATTTGACAAGGTGTTCAAACCTCATTGACCTTCCCAGTGATGTTTGTGGACTGAAACATCTAGAGAACCTCTTTCTTTCTCAATGCTCGAAGTTGAAATCATTACCCGAAAACATACACAACCTGAAATCTCTGAAAACACTTTTTGCTGATAACACAGCTATATCAGAGCTTCCACAGTTCATTTTCCGCTTGACCAAACTCGAAAGGCTTGTTTTGGATAATTGCCTACATTTGAGAAGGCTACCAAACTGCATTGGACATCTATGTTCTTTGCAAGAATTATCTCTTGATCAGTCTGGGTTAGAAGAATTACCCAACACTATTGGATCTTTGAAAAACCTTGAGAAATTCAGTATCATTGGGTGTAAATCTCTCACTGTGATTCCTGATTCTATAGGCAATCTCATATCATTGGAAAGACTTTTGTTTACAAACAGTGGAATTACAGAACTCCCTTCTACCATTGGTTCTTTATCCTACCTGAGGAATTTATCAGCTGGAAACTGTAAATTTCTCAGTAAACTGCCTCATTCAATGGAAAGTTTGGCCTCAATAGTTGAACTTCAGTTAGATGGAACAACTATCACAAATTTGCCACATCAGATTGGAGAGATGAAACAACTGAGGAAACTTGAGATTCAGAATTGCAGTCATCTTGAATCTTTACCGGAGTCTATTGGCCACCTTGCATCTCTTACAACACTCAACATAGTCAATGGAAGAATCAGGGAATTGCCAGAGTCCATTGGATTACTGGAAAATCTTGTCACCTTAAGATTGAACAAATGTAGAATGCTTATAAAGCTTCCAGCTTCTATAGGAAATTTGAAATCTCTATGTCACTTTATGATGGAGGAAACGGCTATGACAGATTTACCTGAAAGTTTTGGGATGCTCTCAAGCTTGAGAACTTTGAGAATGGCAAAGAGGCCTCATTTGGTTCCCACACAACCGCAATTGCAGCCACAATATCAAGGATTTCTTAGTATCTGTCACAGCATTGTGACTGCAATTGTAGCCCCATCAGCTGTAATTATCCGCAATTTTCTGCGATCAACGCAACCACAATTTAAAACCTTACTTGCAGAATCTGAAGTAGTTCCCATTTCAATAGAGGATCCCAGCTCTTTTGTACTACCATCTTCCTTCTGCAATCTGACCTTGCTATATGAGTTGGATGCCCGTGCTTGGAGAATATCTGGAAGGATTCCAGATGATTTTGAGAAGTTATCATTGTTAGAAACTTTGAATTTGGGCCAAAACAATTTTCACAGCCTTCCTTCAAGCTTGAAAGGCCTTTCCATTCTCAAGAAGCTTGCACTGCCAAACTGCAGGGAGCTGATGTCTCTCCCCTCACTTCCTTCAAGCTTGATTGAACTGAATGTTGAAAACTGTTCTGCATTAGAAACCATCCATGACATTTCAAATTTAGAGAGTTTGCAGGAGTTGAAACTCACAAATTGTGAAAAAGTGGTGGATATTCCAGGGCTTGAATGCTTGAAGTCCTTGAGAAGGTTATACTTGAGTGGTTGCACTGCATGCTCCTCCCAAATATGTAAAAGACTCTCAAAGGTTGCATTGAGGAATTTGGAGAACTTGAGCATGCCAGGAGCCAGATTACCTGAATGGTTTTCAGGACAAACTGTCAACTTTTCCAAGCCCAAAAACCTTCAACTAAAAGGTGTAGTTGTAGGTGTTATTCTTTCAATCAACCATAACATTGATATACCAAATATAATGAGAGATGAAATGCCTGGAGTGATTGATGTTCAAGCAAATGTTCTCAAACTGGGCAAAACTATTTTCAGTACAGTGTTAAACATATGTGGGGTGCCAAGGACGGATGAAGAACACATACACTTGTGTAGGTACCAAGATTACCATCAGTTGGTTGCCTTTTTAAGAGATGCTGATACATTTTGTGTGACTATGAGAAGTCCTCCTTTTGATAAGGGGTTGGAGTTGAAAAAATGTGGGGTTCATTTAATCTTTGAAGGGGATGATGATTATGATGGAGATGAAGATTCATTGGACAATGGCCTGCAATCTGTTTCAGAAAGATTGGCCAAGTTTTTCAACACTTGTGAAGATGGCCATCCCATCTATGCCACTGAGAGTGAAGATGAGTACCAAAAGGAATTGGAGCAGGAACAACAAGAGTCAAGATCATCTCGTATTATTCCACTTAAAAGTAATTCCATTCTTCTATTCCTGATCAGTCTATTCTTTGCGCTATTGGGTTGGTTTTGCTTGAGGTGTCATGTAAGTCCCACTCCCAAAACGGCGCAACCATGCTAA 4350 0.4133 MMSSGFRLRWDVFLSFRGEDTREPFTKSLYDSLHTCGVRAFMDDEGLERGDDIAPSLLEAIDDSAASIVIISPNYASSHWCLEELARICHCGRLVLPVFYRVDPSHVRRQTGPFETGFKSHEQRFEEEKVLKWRKAMNKVGGVAGFVFKGSDSEHKDLIRLLVKRVLKELSNTPMVVAEYAVGLEDRVGKVMELLQVESNGVRILGLYGMGGIGETTLAKALFNSLVGRFERRCFISNVKHYSSKEGGLVSLQSKIISDLSPEEEGSRVHISDVNVGISSIRRVLLVLDDVDDVNQLDALIGKREWFYEGSRVIITTRDKHVLPQSHVNQLFEVQELYPSEALELFSYHALRKKEPPKKWLNLSKQIVSLTGRMPLALEVFGSFLFGKRRVEEWEDALEKLRRIRPEKLQDVLKISYDGLDEQEKCIFLDIACFFLQMGMKRDDVVDILRGCGFRGEIAITVLVEKCLIKITQDNTLWMHDQIRDMGRQIVIDENHVDLGMRSRLWDRAEIMAVLKSEKGTRCIQGIVLDFEDQLKRWNTNYLQSQAKENNEVILQTKSFGPMVNLRLLQINHLRLEGKYLPAELKWLKWRGCPLECIPLDSWPRELAVLDLSNSNKIKYLWGQEGDKVPQNLMVMNLSYCSQLSALPDLSRCRRLEKIDLGNCINLTRIHESIGSLTSLRSLNLTRCSNLIDLPSDVCGLKHLENLFLSQCSKLKSLPENIHNLKSLKTLFADNTAISELPQFIFRLTKLERLVLDNCLHLRRLPNCIGHLCSLQELSLDQSGLEELPNTIGSLKNLEKFSIIGCKSLTVIPDSIGNLISLERLLFTNSGITELPSTIGSLSYLRNLSAGNCKFLSKLPHSMESLASIVELQLDGTTITNLPHQIGEMKQLRKLEIQNCSHLESLPESIGHLASLTTLNIVNGRIRELPESIGLLENLVTLRLNKCRMLIKLPASIGNLKSLCHFMMEETAMTDLPESFGMLSSLRTLRMAKRPHLVPTQPQLQPQYQGFLSICHSIVTAIVAPSAVIIRNFLRSTQPQFKTLLAESEVVPISIEDPSSFVLPSSFCNLTLLYELDARAWRISGRIPDDFEKLSLLETLNLGQNNFHSLPSSLKGLSILKKLALPNCRELMSLPSLPSSLIELNVENCSALETIHDISNLESLQELKLTNCEKVVDIPGLECLKSLRRLYLSGCTACSSQICKRLSKVALRNLENLSMPGARLPEWFSGQTVNFSKPKNLQLKGVVVGVILSINHNIDIPNIMRDEMPGVIDVQANVLKLGKTIFSTVLNICGVPRTDEEHIHLCRYQDYHQLVAFLRDADTFCVTMRSPPFDKGLELKKCGVHLIFEGDDDYDGDEDSLDNGLQSVSERLAKFFNTCEDGHPIYATESEDEYQKELEQEQQESRSSRIIPLKSNSILLFLISLFFALLGWFCLRCHVSPTPKTAQPC. 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03818 1449 SUPERFAMILY L domain-like 866 1136 - -
Seca12g03818 1449 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 145 IPR035897 -
Seca12g03818 1449 Gene3D Ribonuclease Inhibitor 529 728 IPR032675 -
Seca12g03818 1449 Gene3D Ribonuclease Inhibitor 829 1006 IPR032675 -
Seca12g03818 1449 ProSiteProfiles TIR domain profile. 8 167 IPR000157 GO:0007165
Seca12g03818 1449 SUPERFAMILY L domain-like 570 900 - -
Seca12g03818 1449 SMART LRR_bac_2 630 650 - -
Seca12g03818 1449 SMART LRR_bac_2 725 744 - -
Seca12g03818 1449 SMART LRR_bac_2 701 721 - -
Seca12g03818 1449 SMART LRR_bac_2 913 932 - -
Seca12g03818 1449 SMART LRR_bac_2 1094 1113 - -
Seca12g03818 1449 SMART LRR_bac_2 1138 1158 - -
Seca12g03818 1449 Gene3D - 337 421 IPR042197 -
Seca12g03818 1449 Pfam NB-ARC domain 185 407 IPR002182 GO:0043531
Seca12g03818 1449 SMART till_3 9 143 IPR000157 GO:0007165
Seca12g03818 1449 Pfam TIR domain 10 173 IPR000157 GO:0007165
Seca12g03818 1449 Gene3D Ribonuclease Inhibitor 1055 1272 IPR032675 -
Seca12g03818 1449 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 767 IPR044974 GO:0006952
Seca12g03818 1449 SMART LRR_CC_2 653 680 IPR006553 -
Seca12g03818 1449 SMART LRR_CC_2 889 916 IPR006553 -
Seca12g03818 1449 SMART LRR_CC_2 842 869 IPR006553 -
Seca12g03818 1449 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 172 - -
Seca12g03818 1449 PRINTS Disease resistance protein signature 204 219 - -
Seca12g03818 1449 PRINTS Disease resistance protein signature 371 385 - -
Seca12g03818 1449 PRINTS Disease resistance protein signature 675 691 - -
Seca12g03818 1449 PRINTS Disease resistance protein signature 278 292 - -
Seca12g03818 1449 SUPERFAMILY Outer arm dynein light chain 1 1136 1242 - -
Seca12g03818 1449 Gene3D - 171 331 IPR027417 -
Seca12g03818 1449 Gene3D Ribonuclease Inhibitor 733 828 IPR032675 -
Seca12g03818 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 431 IPR027417 -
Seca12g03818 1449 SUPERFAMILY "Winged helix" DNA-binding domain 408 516 IPR036390 -
Seca12g03818 1449 SMART LRR_typ_2 725 748 IPR003591 -
Seca12g03818 1449 SMART LRR_typ_2 819 842 IPR003591 -
Seca12g03818 1449 SMART LRR_typ_2 1094 1116 IPR003591 -
Seca12g03818 1449 SMART LRR_typ_2 913 936 IPR003591 -
Seca12g03818 1449 SMART LRR_typ_2 772 795 IPR003591 -
Seca12g03818 1449 SMART LRR_typ_2 677 701 IPR003591 -
Seca12g03818 1449 SMART LRR_typ_2 866 889 IPR003591 -
Seca12g03818 1449 Gene3D - 3 170 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03818 Seca-Chr12 99358053 99364668 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03818 10 848 WRKY Transcription Factor Family AT4G12020 30.268 1.29e-83 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03818 - - mtr:11408681 1958.73