Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03814 ATGGCAGGAGCGTTTAGGCTCCGATGGGATGTGTTCTTGAGTTTTAGAGGTGAGGACACGCGCGAGGACTTCACGAAAGAGCTCTACGAGTCACTCCATGCTTGTGGGGTGCGTGCTTTCATGGACAACGAAGGGTTGGAGCGTGGGGACGAGATAGCACCGTGCCTTCTGGAGGCCATTGATGACTCTGCAGCGTCTATTGTGATCATCTCTGAAAACTATGCTTCCTCTCATTGGTGTCTCGAAGAACTTGCAAGGATTTGCCACTGTAGGAGGCTCGTCCTGCCCGTTTTCTACGAGGTCGACCCGTCTCATGTCCGAAGACAAACGGGTACCTTTGAAACGGGTTTCAGGTCACATGAACAGAGGTTTGATAAAGAGAAGGTTTTGAGGTGGAGGAAAGCTATGAACAAAGTTGGTGGAATTGCAGGTTTGGTTTTAAAGAAAAAAAGGGGCAAAGAGCATAAGGATCTGATTAGCCTTTTGGTGAAGAGGGTTTTGAAGGAGTTGAGTAATACTCCTATTGTTGTGGCTGAGTATGCAGTGGGGCTTGAAGATCGAGTTGGGAAGGTGATGGAGCTTTTACAAGTTGAATCCAATGGTGTTAGAGTTTTGGGGCTGTATGGGATGGGTGGGGTTGGTAAGACAACCCTGGCCAAGGCTCTTTTCAATAGCCTTGTTGGTCGTTTTGAGCGTCGCTGCTTCATTTCAAATGTCAAACATTATTCATCCAAAGATGGTGGTTTGGTTTCTCTTCAAAGCAAAATCATTAGCGATCTTTCCCCTGAACAAGGGTCAAGAGTTCATATTATCAGTGATGTTAATGTTGCAGAGAAAAAGAATGAGATTATACTGAATACAAAATCCTTTGAACTAATGGTTAACCTGAGACTGCTTCAGATCAATAATCTGATATTGGAAGGCAAGTTTCTTCCCGCTGAACTGAAGTGGCTACAATGGCGAGAATGTCCTTTAGAATACATGCCTTTGGACTCTTGGCCTCGAGAGCTGGCTGTCCTTGATCTCTCAAACAGCAAGAAAATAAAAAGCTTGTGGGGACTGGAAGGTTACAAGCAGGCACCAGAGAACCTAATGGTCTTGAATCTCTCCAACTGCGTCCAACTTACTGCTATCCCTGATTTATCTGGTTGTCACCGTCTAGAGAAGATTAAACTGGAGAGCTGCAGTAATGTAAAGAGGATTCATAACTCAATTGGCAGTTTGACCGCCTTGCGTAGTTTGAATTTGAAATATTGTTCAAACCTTGTTGAGCTTCCCAGTGATGTCTCTGGGTTGACAAATCTGGAGATCATCTATCTTTCTCACTGCTTGAAGTTGAAAGCATTACCAAAAAACATAGGCAGACTGATATCTTTGAAAACACTTCTTGCTGATCACACAGCTATAGCAGAGCTTCCCCAGTCCATATACCGCCTGACCAAACTTGAACAACTTGTTTTAGATTATTGCCCACATTTGATAATGCTACCAAACTGTATTGGACATCTATGTTCTTTGCAAGAATTATCACTGAATCATTCTGGATTAAAAGAATTATCCAACTCTGTTGGCTCCTTGAAAAACCTTGAGAAATTGAGTTTGATTGGATGTGAATCTCTCAATGTAATTCCTGATTCTATAGGCAATCTCATATCGTTGACAGAACTTTTGGTTAGTAATAGTGGAATCAGAGAACTCCCTTCTTCCATCTGTTCTTTATCCTATCTGAGGAAGTTATCAGTTGGAAACTGTAAATTTCTCACTATCACAAATTTGCCAGATCAGATTGGAGAGATGAAACAACTAAGGAAACTTGAGATTGGGAATTGCATCCATCTTGAAGCTTTACCAGAATCTATTGGCAACCTAGCATCTCTTACTACACTGAACATTGTCAATGGAAAAATCAGGGAATTGCCGGATTCCATTGGATTGCTAGAAAATCTTGTCACCTTAAGATTGAACAGATGCAGAATGCTGAGAATGCTTCCAGCTTCTATAGGAAATTTGAAGTCTCTATGCCACTTTGAGATGGAGGAAACAGCTATGTCAGACTTACCTGAAAGTTTTGGAATGCTCTCAAGCTTGAGAACATTGAGAATGGCAAAGAGGCCTCACTTGCCAAAAACCATGGTTATTAACTCCAGCGAGTTTGTACGACCATCTTCCTTCGGCAATCTGACCTTGCTATATGAGCTTGATGCCCGTGCTTGGAGAATATCCGGAAGGATTCCAGATGATTTTGAGAAGTTATCATCATTAGAAACTTTAAATTTAGGCCAAAACAATTTTCACAGCCTTCCTTCCAGCTTGAAAGGCCTTTCCATTCTCAAGAAGCTTGCACTGCCAAACTGCAGGGAGCTGATCTCTCTCCCCTCACTTCCTTCAAGTTTGATTGAACTGAATGTGGAAAACTGTTCTGCATTAGAAACCATTCATGACATTTCAAATTTAGAGAGTTTGCAGGAGTTGAAATTAACAAATTGTGAGAAAGTGGTGGATATTAAAGGTCTTGAATGCTTGAAGTCCTTGAGAAGGTTATACTTGAGTGGTTGCACTGCATGCTCCTCCAGAATATGTAAAAGACTCTCAAAGGTTGCATTGAGGAATTTGGAGAACTTGAGCATGCCAGGAGCCAGATTACCTGAATGGTTTTCAGGACAAACTGTCAGCTTTTCCAAACCCAAAAATCTTGAACTAAAAGGTGTAATTGTAGGTGTTATTCTTTCAATCAACCATAACATTGATATACCAAATATAAAGAGAGATCAAATGCCTGGGGTGATCGATGTTCAAGCAAATGTTCTCAAACTGGGCAAAATTATTTTCAGTACAGTGTTGAACATACGTGGGGTTCCAGGGACGAATGAAGAACACATTCACTTGTGTAGGTACCAAGATTATCATCAATTGGTTGCCTTTTTAAGAGATGCTGATACATTTTGTGTGACTATGAGAAGTCCTCCTTTTGATAAGGGGTTGGAGTTGAAAAAATGTGGGGTTCATTTCATATTTGAAGGGGATGATGATTATGATGGAGACGAAGAATCATTGGACAAAGGCCTACAATCTGTCTCAGAAAGATTGGCCAAGTTTTTCAACACTTGTCAAGGTAGCGATCCTTGA 3126 0.4143 MAGAFRLRWDVFLSFRGEDTREDFTKELYESLHACGVRAFMDNEGLERGDEIAPCLLEAIDDSAASIVIISENYASSHWCLEELARICHCRRLVLPVFYEVDPSHVRRQTGTFETGFRSHEQRFDKEKVLRWRKAMNKVGGIAGLVLKKKRGKEHKDLISLLVKRVLKELSNTPIVVAEYAVGLEDRVGKVMELLQVESNGVRVLGLYGMGGVGKTTLAKALFNSLVGRFERRCFISNVKHYSSKDGGLVSLQSKIISDLSPEQGSRVHIISDVNVAEKKNEIILNTKSFELMVNLRLLQINNLILEGKFLPAELKWLQWRECPLEYMPLDSWPRELAVLDLSNSKKIKSLWGLEGYKQAPENLMVLNLSNCVQLTAIPDLSGCHRLEKIKLESCSNVKRIHNSIGSLTALRSLNLKYCSNLVELPSDVSGLTNLEIIYLSHCLKLKALPKNIGRLISLKTLLADHTAIAELPQSIYRLTKLEQLVLDYCPHLIMLPNCIGHLCSLQELSLNHSGLKELSNSVGSLKNLEKLSLIGCESLNVIPDSIGNLISLTELLVSNSGIRELPSSICSLSYLRKLSVGNCKFLTITNLPDQIGEMKQLRKLEIGNCIHLEALPESIGNLASLTTLNIVNGKIRELPDSIGLLENLVTLRLNRCRMLRMLPASIGNLKSLCHFEMEETAMSDLPESFGMLSSLRTLRMAKRPHLPKTMVINSSEFVRPSSFGNLTLLYELDARAWRISGRIPDDFEKLSSLETLNLGQNNFHSLPSSLKGLSILKKLALPNCRELISLPSLPSSLIELNVENCSALETIHDISNLESLQELKLTNCEKVVDIKGLECLKSLRRLYLSGCTACSSRICKRLSKVALRNLENLSMPGARLPEWFSGQTVSFSKPKNLELKGVIVGVILSINHNIDIPNIKRDQMPGVIDVQANVLKLGKIIFSTVLNIRGVPGTNEEHIHLCRYQDYHQLVAFLRDADTFCVTMRSPPFDKGLELKKCGVHFIFEGDDDYDGDEESLDKGLQSVSERLAKFFNTCQGSDP. 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03814 1041 Gene3D Ribonuclease Inhibitor 492 716 IPR032675 -
Seca12g03814 1041 PRINTS Disease resistance protein signature 816 832 - -
Seca12g03814 1041 PRINTS Disease resistance protein signature 204 219 - -
Seca12g03814 1041 ProSiteProfiles Leucine-rich repeat profile. 753 775 IPR001611 GO:0005515
Seca12g03814 1041 Pfam TIR domain 9 172 IPR000157 GO:0007165
Seca12g03814 1041 SMART till_3 8 142 IPR000157 GO:0007165
Seca12g03814 1041 ProSiteProfiles TIR domain profile. 7 170 IPR000157 GO:0007165
Seca12g03814 1041 Gene3D - 7 171 IPR035897 -
Seca12g03814 1041 SUPERFAMILY L domain-like 589 883 - -
Seca12g03814 1041 Gene3D - 172 294 IPR027417 -
Seca12g03814 1041 Gene3D Ribonuclease Inhibitor 328 491 IPR032675 -
Seca12g03814 1041 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 144 IPR035897 -
Seca12g03814 1041 SUPERFAMILY L domain-like 290 612 - -
Seca12g03814 1041 Gene3D Ribonuclease Inhibitor 717 908 IPR032675 -
Seca12g03814 1041 SMART LRR_typ_2 456 479 IPR003591 -
Seca12g03814 1041 SMART LRR_typ_2 503 526 IPR003591 -
Seca12g03814 1041 SMART LRR_typ_2 550 573 IPR003591 -
Seca12g03814 1041 SMART LRR_typ_2 623 646 IPR003591 -
Seca12g03814 1041 SMART LRR_typ_2 408 432 IPR003591 -
Seca12g03814 1041 SMART LRR_typ_2 751 773 IPR003591 -
Seca12g03814 1041 Pfam NB-ARC domain 185 275 IPR002182 GO:0043531
Seca12g03814 1041 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 274 497 IPR044974 GO:0006952
Seca12g03814 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 263 IPR027417 -
Seca12g03814 1041 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03814 Seca-Chr12 99178341 99192160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03814 511 652 WRKY Transcription Factor Family AT4G12020 37.500 1.26e-12 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03814 - - lang:109340539 1117.83