Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03806 ATGAAGAGGTCCAGAGATGATGGTTACATGAGTTCACAACACAAACGGCCCATGGTGTCTTCTAAAGGAGAACCCTCGGGACAGCCCCAGATGATGAGTAGTGGTCAGAAATTAACCACAAATGACGCCTTAGCATATCTCAAGGCAGTAAAGGATATGTTTCAAGATAAGAGGGAAAAGTATGATGACTTTTTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACAGGTGTCATAGCAAGAGTAAAGGAGCTGTTTAAGGGGCATAGAGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGAAATCACACTTCCATTGGAGGATGAACAACCTCCCCAGAAGAAGCCTGTTGAATTTGCAGAAGCTATACATTTTGTGGGCAAGATTAAGACTCGTTTTCAAGGCAATGATCGTGTTTATAAGTCATTTCTAGACATATTGAATATGTACAGAAAGGAAACGAAGTCTATCTCCGAGGTTTACCAGGAGGTTGCTGCACTTTTCCAGGACCATGCAGATCTTCTTGAGGAGTTTACACATTTTCTTCCTGATACTTCAGGAACAGCCTCTACTCATTATACTGCTGCTCGAAGTTCTCTCCTTCGTGATAGGAGCTCTGCAATGCCAACAGTGAGGCAAATGCATGTTGACAAGAGAGATAGGACCATAGCTTCACATGGTGATTGTGACCTCAGTGTTGACCATCATGATCCAGAACATGACAGGGGTTTGACGAGGGCTGATAAGGAGCAGAGAAGGCGTGAAGAGAGAGAAAGGAGAGAACGGGAAAGGGATGATAGAGATTATGATCATGAAAGTAGTCGGGAGCGTTTATCCCACAAGAGAAAATTAGGTCGTAGGGCCGAGGAGCTGGGTGCTGAACCATTGCATGATGCAGATGAAAATTTCGGCTCGCGCCCTATCTCATCCACTTGTGATGATAAAAGTTCTTTGAAAAGTATGTGTAGTCAAGTGCTTGGTTTCCTAGAAAAAGTCAAGGAGAAATTACGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATAACCCGACAAGAGTTGCAGTCATTGGTGGGTGATTTACTGGGAAAATATGCTGATCTTATGGAGGGATTTAATGAGTTTTTGGCACAATGTGAGAAGAATGAAGGATTCCTTGCTGGTGTCATGAATAAAACTTTATCTTCTGGTCTGAAAACTCCAACCGTTATTTATTCATCAGAGTCCTTGTGGAATGAAGGACATGGACTGAAACCAATGAAGGTAGAGGACAGGGATCGAGATCGTGATAGAGATGATGGGATGAAAGAAAGGGATCGTGAATTCCGAGAAAGAGACAAATCCACTACAATTGCCAGCAAGGATGTTTCAGTTCCTAAGATGTCTCTATATGCTGGCAAGGATAAGTATGTGGCAAAACCTATAAATGAGCTGGACCTTTCAAACTGTGAACGCTGCACTCCCAGTTACCGTCTTCTACCAAAAAATTACCTAATACCATCAGCTAGCCAGAGAACTGAACTTGGTGCAGAAGTACTGAATGATCACTGGGTTTCTGTTACTTCAGGAAGTGAGGATTATTCTTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTAACGATTAAGCGAGTTGAAGAGCTCTTAGAAAAGATTAATGCTAATATAATCAAAGGAGACAGTCCGATTCGTATTGAGGAGCACTTAACAGCTCTAAACCTTCGGTGCATTGAACGATTATATGGTGATCATGGGCTTGATGTGATGGATGGGTTAAGGAAGAATGCATCTTTAGCTTTGCCAGTCATATTGATTCGCTTGAAGCAAAAGCAGGATGAGTGGGCAAAGTGCCGGGCTGATTTTAATAAAGTTTGGGCTGATATATATAAAAAGAACTATCACAAATCACTTGATCACCGTAGCTTCTACTTTAAGCAGCAAGATACGAAAAGCTTGAGCACTAAAGCCTTACTAGCAGAGATCAAAGAAATTAGTGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCAATTGCCGCTGGAAATAGACGGCCCATTCTTCCTAACTTGGAATTTGCGTATCCTGATCCGGAGATTCATGAAGATTTGTATCAGCTCATAAAATATTCCTGTGGAGAAGTATGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACACATGCTTGGTGTTCCTTCTCGACCCCATGGTCCTGAGGACACTGAAGATGTTGTCAAGGCTAAGAATAATTCTGCCAAAAGTGGCACTGCAAGCATTGCTGAGGGTGATGGCACTCCTGGTGTTGGTGCTACCGTAATGAATCATAAGAATTTAAACACTAAAAGAAATGGGGACGAGATAGTTCCATTAGAACAATCAAATTCTTGCAAAGAATGGCAAACAAATGGGGATAGTGGGGTTAAAGAGGATAATTGTCTTGAATCATACCGTTCTACCCATAAGACTGAAACTTTGGGAAGTAGTACACAGCAGGGTAAAATGAATATAAGCGCATCCATGTCTGATGAGCTATCAAGAGTAAATAAGCAAGATCATTCCATTGAACGGTTGATTAATAATGTCTCACTGTCCTCCGGAGTGGAGCAAAGTAATGGAAGAACAAATGTAGATAATGCATCAGGACTTACTACAACTCCATCGAGACCTGGTAATGTTTCTGGTGAGGGAGGCCTTGATTTACCTTCATCAGAGGGTGCTGATTCTACAAGACCAGTTACATCAACAAATGGGGCCATCACTGAAGAAACCAAAGTTCATAGATATCACGAAGAATCAATTAGACACTTCAAAAGTGAAAGAGAAGAGGGTGAATTATCTCCTAATGGAGACTTTGAAGAGGATAACTTTGCAGTTTATGGAGATGCTGGTTCGAAGGCAGTGCTTAAAGGAAAAGATGGTAGTACTAGTCGACAATACCAAAATAGACATGGGGAAGAAGTTTGTGGTGAAGCTGGAGGCGAAAATGATGCTGATGATGAAGGTGAAGATAGTCCTCATAGATCATCAGAGGGCAGTGAAAATGCCTCTGAAAATGGAGATGTTTCTGGTACCGAGTCCGCTGATGGTGAGGAGTGTTCTCGAGAAGAACATGAGGAGGATGGGGATCATGAACATGATAACAAGGCCGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCCAATGATGTTGAAGGAGATGGAACCTCATTGCCATATTCAGAGCGCTTTCTTCTCACTGTAAAGCCTCTGGCAAAACATGTTCCGTCAGTGTTGCATGAGAAAGAAAGAAATGTTCGAGTTTTTTATGGAAGTGATTCCTTTTATGTGTTGTTTAGGCTCCATCAGATATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCTGCTGAAAGGAAATGGAGAGCATCAAATGATACAAGCTCTACTGATCGATATGGCAGGTTCATGAATGCCCTTTACAATTTACTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAGTCATACGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCACTGATGAGATGGATAACAAGCTTCTTCAACTATATACATATGAACAATCAAGAAAACCAGGAAGATTTGTTGATATAGTCTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATGTTCACCTGCACCTACCCAATTGTCTATTCAACTGATGGACTACGGGCATGATAAGCCTGAAGTGACTGTTGTGTCAATGGATCCTAATTTTTCGGCTTATCTGCACAATGATTTCCTATCTGTTGTCCCTGACAAAATGGAGAAGTCAGGAATTTTCTTGAAAAGGAATAAACGCAAATATGCATGCAGTGATGAATTTTCAAGCCAAGCCATGGACGAACTACAAGTTATCAATGGTCTGGAGTGTAAGATAGCTTGCAATTCTTCCAAGGTTTCATACGTTTTAGATACCGAAGACTTTTTATTTCGAACAAGAAGGAAAAGGAGAACCTTGCATCAGAACAATTCATGCCATGAACAGGAAAAGTCTTCAATCATTCGTTCTAGCAGAGCACAGCGATTCTGCAAATTGTTTTCCATTAAATGA 4290 0.4058 MKRSRDDGYMSSQHKRPMVSSKGEPSGQPQMMSSGQKLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAIHFVGKIKTRFQGNDRVYKSFLDILNMYRKETKSISEVYQEVAALFQDHADLLEEFTHFLPDTSGTASTHYTAARSSLLRDRSSAMPTVRQMHVDKRDRTIASHGDCDLSVDHHDPEHDRGLTRADKEQRRREERERRERERDDRDYDHESSRERLSHKRKLGRRAEELGAEPLHDADENFGSRPISSTCDDKSSLKSMCSQVLGFLEKVKEKLRNPEDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYADLMEGFNEFLAQCEKNEGFLAGVMNKTLSSGLKTPTVIYSSESLWNEGHGLKPMKVEDRDRDRDRDDGMKERDREFRERDKSTTIASKDVSVPKMSLYAGKDKYVAKPINELDLSNCERCTPSYRLLPKNYLIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTIKRVEELLEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDGLRKNASLALPVILIRLKQKQDEWAKCRADFNKVWADIYKKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFAYPDPEIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEHMLGVPSRPHGPEDTEDVVKAKNNSAKSGTASIAEGDGTPGVGATVMNHKNLNTKRNGDEIVPLEQSNSCKEWQTNGDSGVKEDNCLESYRSTHKTETLGSSTQQGKMNISASMSDELSRVNKQDHSIERLINNVSLSSGVEQSNGRTNVDNASGLTTTPSRPGNVSGEGGLDLPSSEGADSTRPVTSTNGAITEETKVHRYHEESIRHFKSEREEGELSPNGDFEEDNFAVYGDAGSKAVLKGKDGSTSRQYQNRHGEEVCGEAGGENDADDEGEDSPHRSSEGSENASENGDVSGTESADGEECSREEHEEDGDHEHDNKAESEGEAEGMADANDVEGDGTSLPYSERFLLTVKPLAKHVPSVLHEKERNVRVFYGSDSFYVLFRLHQILYERIQSAKINSSSAERKWRASNDTSSTDRYGRFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYTYEQSRKPGRFVDIVYHENARVLLHDENIYRIECSPAPTQLSIQLMDYGHDKPEVTVVSMDPNFSAYLHNDFLSVVPDKMEKSGIFLKRNKRKYACSDEFSSQAMDELQVINGLECKIACNSSKVSYVLDTEDFLFRTRRKRRTLHQNNSCHEQEKSSIIRSSRAQRFCKLFSIK. 1430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03806 1429 MobiDBLite consensus disorder prediction 206 323 - -
Seca12g03806 1429 SUPERFAMILY PAH2 domain 329 394 IPR036600 GO:0006355
Seca12g03806 1429 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Seca12g03806 1429 MobiDBLite consensus disorder prediction 1008 1110 - -
Seca12g03806 1429 FunFam Paired amphipathic helix SIN3-like protein 121 192 - -
Seca12g03806 1429 MobiDBLite consensus disorder prediction 431 463 - -
Seca12g03806 1429 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Seca12g03806 1429 SMART hdac_interact2seq4b 497 597 IPR013194 -
Seca12g03806 1429 FunFam Paired amphipathic helix protein SIN3 322 396 - -
Seca12g03806 1429 Coils Coil 253 273 - -
Seca12g03806 1429 FunFam Paired amphipathic helix protein Sin3 42 104 - -
Seca12g03806 1429 Pfam Paired amphipathic helix repeat 146 189 IPR003822 GO:0006355
Seca12g03806 1429 Pfam Paired amphipathic helix repeat 347 391 IPR003822 GO:0006355
Seca12g03806 1429 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Seca12g03806 1429 Gene3D Paired amphipathic helix 324 396 IPR036600 GO:0006355
Seca12g03806 1429 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Seca12g03806 1429 MobiDBLite consensus disorder prediction 14 36 - -
Seca12g03806 1429 Gene3D Paired amphipathic helix 120 193 IPR036600 GO:0006355
Seca12g03806 1429 MobiDBLite consensus disorder prediction 906 996 - -
Seca12g03806 1429 MobiDBLite consensus disorder prediction 906 932 - -
Seca12g03806 1429 MobiDBLite consensus disorder prediction 947 962 - -
Seca12g03806 1429 SUPERFAMILY PAH2 domain 118 191 IPR036600 GO:0006355
Seca12g03806 1429 MobiDBLite consensus disorder prediction 432 463 - -
Seca12g03806 1429 ProSiteProfiles PAH domain profile. 325 394 IPR003822 GO:0006355
Seca12g03806 1429 MobiDBLite consensus disorder prediction 1017 1031 - -
Seca12g03806 1429 Pfam C-terminal domain of Sin3a protein 1143 1389 IPR031693 -
Seca12g03806 1429 MobiDBLite consensus disorder prediction 963 986 - -
Seca12g03806 1429 MobiDBLite consensus disorder prediction 1068 1096 - -
Seca12g03806 1429 Pfam Sin3 family co-repressor 499 590 IPR013194 -
Seca12g03806 1429 MobiDBLite consensus disorder prediction 1 36 - -
Seca12g03806 1429 SUPERFAMILY PAH2 domain 34 105 IPR036600 GO:0006355
Seca12g03806 1429 Coils Coil 570 590 - -
Seca12g03806 1429 MobiDBLite consensus disorder prediction 220 308 - -
Seca12g03806 1429 PANTHER SIN3B-RELATED 36 1287 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03806 Seca-Chr12 98712880 98725930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03806 15 118 WRKY Transcription Factor Family AT4G12020 55.769 1.08e-23 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca12g03806 Sin3a_C 2.8e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03806 K11644 - gmx:100781798 2251.86