LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g03801	ATGGCTTTGAATATGATGCTTCAATCATGGCTTCTTTTGAGCATTGTTTTAGTTTTACACAGTTTTTCAATACCAACCTGTCATTGCCAGACCAGTTCTCCTCAGAACATTGAAACTTTCTATCCTAATGAAACTTTAGCCCCAAGAACACAACCACCCGAGCCACCACCAAAGCCACAACCATCACCACCAACACAAGGGAATGCCCCAGGACCAGTGGCAGCATCCAAAAGTTCTTCATCAAATGGTAAGGTAGCAAAGGCGGTGGCTGCAACTGCAGCAAGCACTATAGTTGTTTGTGGTTTAATCTTCTTTTTAGTTCAAAGGTGCTTAAGGGCAAGAAGGAGAAAGGAGATAACTAACACTGCTTCTTCTGGAGATAGGCGTGTTGTGCCTCAGGGTAATGTGTTTGAGAGAATTGATGGAAATGTCAGAGGACTAATTGTTGATGAGGATGGTTTGGATGTGATTTATTGGAGAAAACTTCAAGGGAAAAACTCCAACAAGGATCTTTATAAGGAGGTCTTGCCTAGTCCCAAAAACAAAGAAGTAGTAGAAGATGATGATGATCATGAAGGAAATCAAGTGAAAAAATCTAAGTCAATCCAAGAAATTCCTCTGCTTAGAGGGAAATCTTCAACCTCCCACATAAATATATTTCCAGAAGAGGATGAGCCATATAGAATTGCAAGAATTCCCCCTCCTGCTCCTCCTCATGATGGGGTTGTTATCAAGGATATTCAAAAACCAGACTCTCCATCTCAATCATCCACTCCACCCCCTCTTCCTTCACCAACAACACCATCCTCCACTTCTTTTTCAGCAATTCCAAAAGTGAATGGCTCTGCAACATCAGCTCCTCCTCCCCCAGTGCCAGAGAGAAAGAGTCCAGCAGCACCACCTCCCCCTCCCCCAATTCCAGCTAGAAAGAGTCCAGCACCACCTCCTCTTCCACCAAAGACAGGTAGTTTGAAGTCATCAACAAAATCACCACCTGGCCCTATCAAGCAAAGTAACTCTTCAGGGAAAGGCATGCCAGAAACCAGCAATGATCCAATGAAGCTGAAGCCTTTGCATTGGGATAAGGTGAATACTAATAATGCTGATCATTCCATGGTGTGGGACAAAGTTGATCGTGGCTCTTTCAGGGTTGATCAAGATCTTATGGAAGCTCTCTTTGGTTATGTGGCCACCAACCGAAGATCCCCTAAAGGAAAGAGTCAATCAACAAGTCCAAGCAAGGAGGCCTCAGCTCCATCAACAAAAAGTTTCCTTCTTGACCCCAGAAAATCACAGAACATTGCTATTGTTTTGAAATCTCTTGCAGTCTCACAAGGTGAAATTCTTGATGCACTCGTTGATGGTAAAGGCCTAAATGCAGATACCCTTGAAAAGCTTTCTAGAGTTTCCCCAACAGAAGAAGAGCAATCTCTTATCCTCGAATACAAAGGAGACCCAGCAAGACTTGCTGCAGCTGAATCCTTCCTATATCACATCCTTAAAGCTGTTCCTTCAGCATTTAAGCGCTTGAATGCCATGCTATTCAGGTTGAACTATGACTCAGAGATTCAAGAAATCAAGGAATCTCTGCAGACCATTGAACTGGGGTGTAAGGAGCTTAAAAGCCAAGGACTCTTTGTGAAGCTTCTTGAAGCAGTGCTTAAGGCAGGAAATCGTATGAATGCAGGAACTGCCAGAGGTAATGCTCAAGCTTTCAACTTGGCTTCTCTAAGAAAGCTCTCTGATGTCAAAAGCACCAATGGAAAAACCACATTACTTCACTTTGTGGTAGAAGAAGTAGTCCGTTCTGAAGGAAAACGTGTTGTTGTTAACCGTAATGGCAGCCTGAGCCGTAGTAGCAGTAGGAACAGCAGCATCAGTGCAAACTCTGAGAACAGTGCTGCTTCAGATGAACAGAAAGAAAGGGAATATATGATGCTAGGATTACCAATTGTAGGAGGGATCAGTTCTGAACTCTCCAACGTTAAGAAAGTAGCACATATAGATTATAACAGTTTAGTTGGTTCAATCTCAGCCCTCTCAACCCGGCTAGTTGAAATTCAAGAACTTGTTTCCCGGTGTGGAAATGGTGAAGGAGGATATTTTGTAAAAGAAATGGACCATTTTCTTAGAAATGCTGAGGAAGAATTGAAATTGGTGAGGGACAAACAAACAGGTGTATGGCAGCTTCTCAATAAAACAGCACAATATTATCAAGGAGGAGCTTCAAAAGACTCTGCAGAAAAAAATCTTCAACTATTTGCTATAGTCAAGGATTTTCTGGGAATGGTTGATCAAGCTTGCATTGAGATTGCACGTGACATGCAGAAGAGGAAGACCCCCAAGGCAATTTTTAGCTAA	2361	0.4269	MALNMMLQSWLLLSIVLVLHSFSIPTCHCQTSSPQNIETFYPNETLAPRTQPPEPPPKPQPSPPTQGNAPGPVAASKSSSSNGKVAKAVAATAASTIVVCGLIFFLVQRCLRARRRKEITNTASSGDRRVVPQGNVFERIDGNVRGLIVDEDGLDVIYWRKLQGKNSNKDLYKEVLPSPKNKEVVEDDDDHEGNQVKKSKSIQEIPLLRGKSSTSHINIFPEEDEPYRIARIPPPAPPHDGVVIKDIQKPDSPSQSSTPPPLPSPTTPSSTSFSAIPKVNGSATSAPPPPVPERKSPAAPPPPPPIPARKSPAPPPLPPKTGSLKSSTKSPPGPIKQSNSSGKGMPETSNDPMKLKPLHWDKVNTNNADHSMVWDKVDRGSFRVDQDLMEALFGYVATNRRSPKGKSQSTSPSKEASAPSTKSFLLDPRKSQNIAIVLKSLAVSQGEILDALVDGKGLNADTLEKLSRVSPTEEEQSLILEYKGDPARLAAAESFLYHILKAVPSAFKRLNAMLFRLNYDSEIQEIKESLQTIELGCKELKSQGLFVKLLEAVLKAGNRMNAGTARGNAQAFNLASLRKLSDVKSTNGKTTLLHFVVEEVVRSEGKRVVVNRNGSLSRSSSRNSSISANSENSAASDEQKEREYMMLGLPIVGGISSELSNVKKVAHIDYNSLVGSISALSTRLVEIQELVSRCGNGEGGYFVKEMDHFLRNAEEELKLVRDKQTGVWQLLNKTAQYYQGGASKDSAEKNLQLFAIVKDFLGMVDQACIEIARDMQKRKTPKAIFS.	787

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g03801	786	Pfam	Formin Homology 2 Domain	352	764	IPR015425	-
	Seca12g03801	786	Coils	Coil	523	543	-	-
	Seca12g03801	786	MobiDBLite	consensus disorder prediction	400	424	-	-
	Seca12g03801	786	PANTHER	FORMIN-RELATED	28	775	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Seca12g03801	786	SMART	it6_source	342	779	IPR015425	-
	Seca12g03801	786	MobiDBLite	consensus disorder prediction	322	347	-	-
	Seca12g03801	786	Gene3D	Formin, FH2 domain	365	783	IPR042201	-
	Seca12g03801	786	MobiDBLite	consensus disorder prediction	612	634	-	-
	Seca12g03801	786	MobiDBLite	consensus disorder prediction	224	358	-	-
	Seca12g03801	786	MobiDBLite	consensus disorder prediction	612	639	-	-

Showing 1 to 10 of 18 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g03801	Seca-Chr12	98581217	98583813	Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g03801	10	780	FH2 protein (formin) Gene Family	AT1G70140	44.780	0.0	576

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g03801	-		-	gmx:100783219	974.156

Showing 1 to 1 of 1 entries