Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03801 ATGGCTTTGAATATGATGCTTCAATCATGGCTTCTTTTGAGCATTGTTTTAGTTTTACACAGTTTTTCAATACCAACCTGTCATTGCCAGACCAGTTCTCCTCAGAACATTGAAACTTTCTATCCTAATGAAACTTTAGCCCCAAGAACACAACCACCCGAGCCACCACCAAAGCCACAACCATCACCACCAACACAAGGGAATGCCCCAGGACCAGTGGCAGCATCCAAAAGTTCTTCATCAAATGGTAAGGTAGCAAAGGCGGTGGCTGCAACTGCAGCAAGCACTATAGTTGTTTGTGGTTTAATCTTCTTTTTAGTTCAAAGGTGCTTAAGGGCAAGAAGGAGAAAGGAGATAACTAACACTGCTTCTTCTGGAGATAGGCGTGTTGTGCCTCAGGGTAATGTGTTTGAGAGAATTGATGGAAATGTCAGAGGACTAATTGTTGATGAGGATGGTTTGGATGTGATTTATTGGAGAAAACTTCAAGGGAAAAACTCCAACAAGGATCTTTATAAGGAGGTCTTGCCTAGTCCCAAAAACAAAGAAGTAGTAGAAGATGATGATGATCATGAAGGAAATCAAGTGAAAAAATCTAAGTCAATCCAAGAAATTCCTCTGCTTAGAGGGAAATCTTCAACCTCCCACATAAATATATTTCCAGAAGAGGATGAGCCATATAGAATTGCAAGAATTCCCCCTCCTGCTCCTCCTCATGATGGGGTTGTTATCAAGGATATTCAAAAACCAGACTCTCCATCTCAATCATCCACTCCACCCCCTCTTCCTTCACCAACAACACCATCCTCCACTTCTTTTTCAGCAATTCCAAAAGTGAATGGCTCTGCAACATCAGCTCCTCCTCCCCCAGTGCCAGAGAGAAAGAGTCCAGCAGCACCACCTCCCCCTCCCCCAATTCCAGCTAGAAAGAGTCCAGCACCACCTCCTCTTCCACCAAAGACAGGTAGTTTGAAGTCATCAACAAAATCACCACCTGGCCCTATCAAGCAAAGTAACTCTTCAGGGAAAGGCATGCCAGAAACCAGCAATGATCCAATGAAGCTGAAGCCTTTGCATTGGGATAAGGTGAATACTAATAATGCTGATCATTCCATGGTGTGGGACAAAGTTGATCGTGGCTCTTTCAGGGTTGATCAAGATCTTATGGAAGCTCTCTTTGGTTATGTGGCCACCAACCGAAGATCCCCTAAAGGAAAGAGTCAATCAACAAGTCCAAGCAAGGAGGCCTCAGCTCCATCAACAAAAAGTTTCCTTCTTGACCCCAGAAAATCACAGAACATTGCTATTGTTTTGAAATCTCTTGCAGTCTCACAAGGTGAAATTCTTGATGCACTCGTTGATGGTAAAGGCCTAAATGCAGATACCCTTGAAAAGCTTTCTAGAGTTTCCCCAACAGAAGAAGAGCAATCTCTTATCCTCGAATACAAAGGAGACCCAGCAAGACTTGCTGCAGCTGAATCCTTCCTATATCACATCCTTAAAGCTGTTCCTTCAGCATTTAAGCGCTTGAATGCCATGCTATTCAGGTTGAACTATGACTCAGAGATTCAAGAAATCAAGGAATCTCTGCAGACCATTGAACTGGGGTGTAAGGAGCTTAAAAGCCAAGGACTCTTTGTGAAGCTTCTTGAAGCAGTGCTTAAGGCAGGAAATCGTATGAATGCAGGAACTGCCAGAGGTAATGCTCAAGCTTTCAACTTGGCTTCTCTAAGAAAGCTCTCTGATGTCAAAAGCACCAATGGAAAAACCACATTACTTCACTTTGTGGTAGAAGAAGTAGTCCGTTCTGAAGGAAAACGTGTTGTTGTTAACCGTAATGGCAGCCTGAGCCGTAGTAGCAGTAGGAACAGCAGCATCAGTGCAAACTCTGAGAACAGTGCTGCTTCAGATGAACAGAAAGAAAGGGAATATATGATGCTAGGATTACCAATTGTAGGAGGGATCAGTTCTGAACTCTCCAACGTTAAGAAAGTAGCACATATAGATTATAACAGTTTAGTTGGTTCAATCTCAGCCCTCTCAACCCGGCTAGTTGAAATTCAAGAACTTGTTTCCCGGTGTGGAAATGGTGAAGGAGGATATTTTGTAAAAGAAATGGACCATTTTCTTAGAAATGCTGAGGAAGAATTGAAATTGGTGAGGGACAAACAAACAGGTGTATGGCAGCTTCTCAATAAAACAGCACAATATTATCAAGGAGGAGCTTCAAAAGACTCTGCAGAAAAAAATCTTCAACTATTTGCTATAGTCAAGGATTTTCTGGGAATGGTTGATCAAGCTTGCATTGAGATTGCACGTGACATGCAGAAGAGGAAGACCCCCAAGGCAATTTTTAGCTAA 2361 0.4269 MALNMMLQSWLLLSIVLVLHSFSIPTCHCQTSSPQNIETFYPNETLAPRTQPPEPPPKPQPSPPTQGNAPGPVAASKSSSSNGKVAKAVAATAASTIVVCGLIFFLVQRCLRARRRKEITNTASSGDRRVVPQGNVFERIDGNVRGLIVDEDGLDVIYWRKLQGKNSNKDLYKEVLPSPKNKEVVEDDDDHEGNQVKKSKSIQEIPLLRGKSSTSHINIFPEEDEPYRIARIPPPAPPHDGVVIKDIQKPDSPSQSSTPPPLPSPTTPSSTSFSAIPKVNGSATSAPPPPVPERKSPAAPPPPPPIPARKSPAPPPLPPKTGSLKSSTKSPPGPIKQSNSSGKGMPETSNDPMKLKPLHWDKVNTNNADHSMVWDKVDRGSFRVDQDLMEALFGYVATNRRSPKGKSQSTSPSKEASAPSTKSFLLDPRKSQNIAIVLKSLAVSQGEILDALVDGKGLNADTLEKLSRVSPTEEEQSLILEYKGDPARLAAAESFLYHILKAVPSAFKRLNAMLFRLNYDSEIQEIKESLQTIELGCKELKSQGLFVKLLEAVLKAGNRMNAGTARGNAQAFNLASLRKLSDVKSTNGKTTLLHFVVEEVVRSEGKRVVVNRNGSLSRSSSRNSSISANSENSAASDEQKEREYMMLGLPIVGGISSELSNVKKVAHIDYNSLVGSISALSTRLVEIQELVSRCGNGEGGYFVKEMDHFLRNAEEELKLVRDKQTGVWQLLNKTAQYYQGGASKDSAEKNLQLFAIVKDFLGMVDQACIEIARDMQKRKTPKAIFS. 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03801 786 Pfam Formin Homology 2 Domain 352 764 IPR015425 -
Seca12g03801 786 Coils Coil 523 543 - -
Seca12g03801 786 MobiDBLite consensus disorder prediction 400 424 - -
Seca12g03801 786 PANTHER FORMIN-RELATED 28 775 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Seca12g03801 786 SMART it6_source 342 779 IPR015425 -
Seca12g03801 786 MobiDBLite consensus disorder prediction 322 347 - -
Seca12g03801 786 Gene3D Formin, FH2 domain 365 783 IPR042201 -
Seca12g03801 786 MobiDBLite consensus disorder prediction 612 634 - -
Seca12g03801 786 MobiDBLite consensus disorder prediction 224 358 - -
Seca12g03801 786 MobiDBLite consensus disorder prediction 612 639 - -
Seca12g03801 786 MobiDBLite consensus disorder prediction 48 68 - -
Seca12g03801 786 MobiDBLite consensus disorder prediction 180 198 - -
Seca12g03801 786 MobiDBLite consensus disorder prediction 45 80 - -
Seca12g03801 786 MobiDBLite consensus disorder prediction 283 321 - -
Seca12g03801 786 ProSiteProfiles Formin homology-2 (FH2) domain profile. 345 786 IPR015425 -
Seca12g03801 786 MobiDBLite consensus disorder prediction 401 424 - -
Seca12g03801 786 MobiDBLite consensus disorder prediction 180 202 - -
Seca12g03801 786 SUPERFAMILY Formin homology 2 domain (FH2 domain) 300 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03801 Seca-Chr12 98581217 98583813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03801 10 780 FH2 protein (formin) Gene Family AT1G70140 44.780 0.0 576