Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03800 ATGGAGTTTGACAGTGTCGTTTCTCTACCAAGGACGCCGGAGAACATCGACGGTTTTGTTCTGTCGCCGGAGGAATCCCAAGAGGTTCATGTTTTAGCCGTTGATGACAGCCTCGTTGATCGCAAGGTCATTGAACGCTTGCTCAAAGTCTTAGCTTGTAAAGGGGGTTTGAAGAATTTTTCATTGATTGGGAAAACTACAGTAACTGCAGTAGATAGTGGACTCAGAGCACTGCAATTCCTTGGACTTGACGAGCAGAAAATACCCTCTGAATCTAATCGTTTAAAGGTGGATCTAATAATCACAGATTACTGTATGCCTGGAATGACCGGTTATGAGTTGCTCAAGAAAATCAAGGAATCTTCAACTTTCAGAGAAATTCCAGTGGTGATTATGTCCTCTGAAAACATTTTGCCGCGCATAGACAGATGTTTGGAGGAAGGTGCAGAGGATTTCATAGTGAAGCCAGTGAAGTTATCTGACGTTAAGCGCTTGAAAGATTACATGACAACGAAAGAGGTTAAAGGCGAAGACAGAGGAATCAACAAAAGGAAGCTACCGGACACCTCTGATGTGTCATCATCACCACCGTCCACTTCCTCATCAACGCTTTCATCATCGTCGTCGTTACCTTCTTCTCCATCACCGTCATCTTCCCTTTCATCTTCACCCTCCGTGATTGACTCTCCAATCAGACGGCTTAAAATGACCAGCACTGGTTGA 723 0.444 MEFDSVVSLPRTPENIDGFVLSPEESQEVHVLAVDDSLVDRKVIERLLKVLACKGGLKNFSLIGKTTVTAVDSGLRALQFLGLDEQKIPSESNRLKVDLIITDYCMPGMTGYELLKKIKESSTFREIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTKEVKGEDRGINKRKLPDTSDVSSSPPSTSSSTLSSSSSLPSSPSPSSSLSSSPSVIDSPIRRLKMTSTG. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03800 240 ProSiteProfiles Response regulatory domain profile. 30 170 IPR001789 GO:0000160
Seca12g03800 240 SUPERFAMILY CheY-like 29 164 IPR011006 -
Seca12g03800 240 CDD REC_typeA_ARR 31 165 - -
Seca12g03800 240 Gene3D - 29 203 - -
Seca12g03800 240 Pfam Response regulator receiver domain 31 162 IPR001789 GO:0000160
Seca12g03800 240 MobiDBLite consensus disorder prediction 187 240 - -
Seca12g03800 240 SMART REC_2 29 169 IPR001789 GO:0000160
Seca12g03800 240 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 194 IPR045279 GO:0009736
Seca12g03800 240 MobiDBLite consensus disorder prediction 174 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03800 Seca-Chr12 98525438 98526928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03800 23 232 Response Regulator Gene Family AT1G59940 60.369 1.41e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca12g03800 Response_reg 1.1e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03800 K14492 - gmx:100527828 287.345